Hb_004635_100

Information

Type -
Description -
Location Contig4635: 66399-69656
Sequence    

Annotation

kegg
ID rcu:RCOM_0292990
description magnesium ion binding protein, putative
nr
ID XP_012072981.1
description PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
swissprot
ID P39135
description 4'-phosphopantetheinyl transferase sfp OS=Bacillus subtilis (strain 168) GN=sfp PE=1 SV=2
trembl
ID A0A067KMH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06766 PE=4 SV=1
Gene Ontology
ID GO:0000287
description l-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43890: 66523-67962 , PASA_asmbl_43891: 69151-69601
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004635_100 0.0 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
2 Hb_000240_090 0.055883116 - - Rab5 [Hevea brasiliensis]
3 Hb_001059_030 0.0635310898 - - PREDICTED: F-box protein At5g03100-like [Solanum lycopersicum]
4 Hb_000915_090 0.0646803181 - - PREDICTED: transcription initiation factor TFIID subunit 14b [Jatropha curcas]
5 Hb_029879_130 0.0654093241 - - Derlin-2, putative [Ricinus communis]
6 Hb_000676_180 0.0706475492 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
7 Hb_000120_680 0.0711388534 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
8 Hb_000928_210 0.0755298027 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
9 Hb_000058_060 0.0772157271 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
10 Hb_004109_170 0.0782551812 - - PREDICTED: probable ribokinase [Jatropha curcas]
11 Hb_000876_070 0.0789029279 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
12 Hb_000059_370 0.0790799347 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
13 Hb_000340_570 0.0793600658 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
14 Hb_010422_060 0.0797552506 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
15 Hb_001105_030 0.0801615375 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
16 Hb_159809_020 0.0801836385 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_004254_120 0.0815525172 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000062_220 0.0828239671 - - BnaC02g35870D [Brassica napus]
19 Hb_000638_250 0.0828298252 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_000201_120 0.0830261524 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]

Gene co-expression network

sample Hb_004635_100 Hb_004635_100 Hb_000240_090 Hb_000240_090 Hb_004635_100--Hb_000240_090 Hb_001059_030 Hb_001059_030 Hb_004635_100--Hb_001059_030 Hb_000915_090 Hb_000915_090 Hb_004635_100--Hb_000915_090 Hb_029879_130 Hb_029879_130 Hb_004635_100--Hb_029879_130 Hb_000676_180 Hb_000676_180 Hb_004635_100--Hb_000676_180 Hb_000120_680 Hb_000120_680 Hb_004635_100--Hb_000120_680 Hb_000240_090--Hb_000120_680 Hb_129204_030 Hb_129204_030 Hb_000240_090--Hb_129204_030 Hb_000347_410 Hb_000347_410 Hb_000240_090--Hb_000347_410 Hb_029866_020 Hb_029866_020 Hb_000240_090--Hb_029866_020 Hb_021409_030 Hb_021409_030 Hb_000240_090--Hb_021409_030 Hb_010422_060 Hb_010422_060 Hb_001059_030--Hb_010422_060 Hb_012053_070 Hb_012053_070 Hb_001059_030--Hb_012053_070 Hb_000062_220 Hb_000062_220 Hb_001059_030--Hb_000062_220 Hb_001059_030--Hb_000240_090 Hb_000059_370 Hb_000059_370 Hb_001059_030--Hb_000059_370 Hb_002163_020 Hb_002163_020 Hb_000915_090--Hb_002163_020 Hb_008725_260 Hb_008725_260 Hb_000915_090--Hb_008725_260 Hb_000915_090--Hb_010422_060 Hb_000915_090--Hb_000240_090 Hb_004109_170 Hb_004109_170 Hb_000915_090--Hb_004109_170 Hb_000260_030 Hb_000260_030 Hb_029879_130--Hb_000260_030 Hb_029879_130--Hb_004109_170 Hb_001902_140 Hb_001902_140 Hb_029879_130--Hb_001902_140 Hb_000614_160 Hb_000614_160 Hb_029879_130--Hb_000614_160 Hb_002408_020 Hb_002408_020 Hb_029879_130--Hb_002408_020 Hb_004116_190 Hb_004116_190 Hb_000676_180--Hb_004116_190 Hb_000479_090 Hb_000479_090 Hb_000676_180--Hb_000479_090 Hb_005725_250 Hb_005725_250 Hb_000676_180--Hb_005725_250 Hb_012286_030 Hb_012286_030 Hb_000676_180--Hb_012286_030 Hb_005846_040 Hb_005846_040 Hb_000676_180--Hb_005846_040 Hb_000617_150 Hb_000617_150 Hb_000120_680--Hb_000617_150 Hb_000563_250 Hb_000563_250 Hb_000120_680--Hb_000563_250 Hb_001699_130 Hb_001699_130 Hb_000120_680--Hb_001699_130 Hb_000622_090 Hb_000622_090 Hb_000120_680--Hb_000622_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.08772 5.93597 5.89413 5.90773 7.5133 8.76865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4172 17.2933 15.1403 5.24905 6.395

CAGE analysis