Hb_004635_120

Information

Type -
Description -
Location Contig4635: 90545-95156
Sequence    

Annotation

kegg
ID pop:POPTR_0016s07890g
description POPTRDRAFT_256537; hypothetical protein
nr
ID XP_012072985.1
description PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
swissprot
ID Q9FMR1
description Rho GTPase-activating protein 1 OS=Arabidopsis thaliana GN=ROPGAP1 PE=2 SV=1
trembl
ID A0A067KQR1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06767 PE=4 SV=1
Gene Ontology
ID GO:0007165
description rho gtpase-activating protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43892: 90681-94521 , PASA_asmbl_43893: 94736-95041
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004635_120 0.0 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
2 Hb_001638_200 0.0621531689 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
3 Hb_012395_240 0.0639877471 - - PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
4 Hb_000156_110 0.0644578189 - - Uncharacterized protein TCM_029490 [Theobroma cacao]
5 Hb_000538_090 0.0722614746 transcription factor TF Family: NAC hypothetical protein RCOM_1603380 [Ricinus communis]
6 Hb_000000_390 0.0755675421 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
7 Hb_032920_020 0.0792462857 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
8 Hb_005337_100 0.0792919167 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
9 Hb_000881_020 0.0805025124 - - hypothetical protein MIMGU_mgv1a022110mg, partial [Erythranthe guttata]
10 Hb_000922_200 0.0841286756 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
11 Hb_011472_030 0.0861706848 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
12 Hb_002066_110 0.0877392124 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
13 Hb_012098_100 0.0880681225 - - zinc finger protein, putative [Ricinus communis]
14 Hb_004223_150 0.089114431 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
15 Hb_143629_180 0.0909987827 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
16 Hb_000020_090 0.0930019064 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
17 Hb_002609_120 0.0937050963 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
18 Hb_000058_180 0.0937494282 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
19 Hb_002702_010 0.0961411411 - - carbohydrate binding protein, putative [Ricinus communis]
20 Hb_029695_090 0.0962664588 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]

Gene co-expression network

sample Hb_004635_120 Hb_004635_120 Hb_001638_200 Hb_001638_200 Hb_004635_120--Hb_001638_200 Hb_012395_240 Hb_012395_240 Hb_004635_120--Hb_012395_240 Hb_000156_110 Hb_000156_110 Hb_004635_120--Hb_000156_110 Hb_000538_090 Hb_000538_090 Hb_004635_120--Hb_000538_090 Hb_000000_390 Hb_000000_390 Hb_004635_120--Hb_000000_390 Hb_032920_020 Hb_032920_020 Hb_004635_120--Hb_032920_020 Hb_002609_120 Hb_002609_120 Hb_001638_200--Hb_002609_120 Hb_001439_080 Hb_001439_080 Hb_001638_200--Hb_001439_080 Hb_000009_270 Hb_000009_270 Hb_001638_200--Hb_000009_270 Hb_001638_200--Hb_032920_020 Hb_001638_200--Hb_000156_110 Hb_012395_240--Hb_000538_090 Hb_006816_380 Hb_006816_380 Hb_012395_240--Hb_006816_380 Hb_000928_030 Hb_000928_030 Hb_012395_240--Hb_000928_030 Hb_012395_240--Hb_000000_390 Hb_189208_070 Hb_189208_070 Hb_012395_240--Hb_189208_070 Hb_002835_310 Hb_002835_310 Hb_000156_110--Hb_002835_310 Hb_000156_110--Hb_002609_120 Hb_000156_110--Hb_032920_020 Hb_000156_110--Hb_000000_390 Hb_000538_090--Hb_000000_390 Hb_002078_330 Hb_002078_330 Hb_000538_090--Hb_002078_330 Hb_000058_180 Hb_000058_180 Hb_000538_090--Hb_000058_180 Hb_008147_020 Hb_008147_020 Hb_000538_090--Hb_008147_020 Hb_143629_180 Hb_143629_180 Hb_000538_090--Hb_143629_180 Hb_051663_010 Hb_051663_010 Hb_000000_390--Hb_051663_010 Hb_000000_390--Hb_002078_330 Hb_000000_390--Hb_001638_200 Hb_001674_010 Hb_001674_010 Hb_032920_020--Hb_001674_010 Hb_032920_020--Hb_000009_270 Hb_032920_020--Hb_002609_120 Hb_000028_190 Hb_000028_190 Hb_032920_020--Hb_000028_190 Hb_002150_090 Hb_002150_090 Hb_032920_020--Hb_002150_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.63117 19.7071 16.7222 0.049104 0.015389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0383691 0.0452872 0.057462 0.437856 17.6807

CAGE analysis