Hb_004640_040

Information

Type -
Description -
Location Contig4640: 27682-31732
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004640_040 0.0 - - -
2 Hb_134312_010 0.014785929 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
3 Hb_087008_010 0.039110229 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
4 Hb_000189_060 0.2167238375 - - PREDICTED: uncharacterized protein LOC105637477 [Jatropha curcas]
5 Hb_000513_080 0.2334190294 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 43 [Jatropha curcas]
6 Hb_000123_100 0.2671275767 - - Uncharacterized protein TCM_024608 [Theobroma cacao]
7 Hb_005892_070 0.2915912044 - - Ribosomal L11 methyltransferase [Gossypium arboreum]
8 Hb_059301_010 0.3146191402 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
9 Hb_000525_060 0.3492110191 - - PREDICTED: uncharacterized protein LOC104211307 [Nicotiana sylvestris]
10 Hb_071379_010 0.3555142435 - - PREDICTED: mitogen-activated protein kinase kinase kinase 3-like [Nelumbo nucifera]
11 Hb_001364_020 0.3597627973 - - -
12 Hb_005867_010 0.3599593417 - - -
13 Hb_000038_160 0.3629615053 - - putative gag protein [Coffea canephora]
14 Hb_140049_070 0.3630920942 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002805_320 0.3636154572 - - -
16 Hb_002163_060 0.3654600093 - - -
17 Hb_003740_010 0.3658907858 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000465_200 0.3708637563 - - PREDICTED: protein NSP-INTERACTING KINASE 1 [Jatropha curcas]
19 Hb_000163_120 0.3708703701 - - -
20 Hb_002001_040 0.3711764444 - - hypothetical protein CISIN_1g044945mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_004640_040 Hb_004640_040 Hb_134312_010 Hb_134312_010 Hb_004640_040--Hb_134312_010 Hb_087008_010 Hb_087008_010 Hb_004640_040--Hb_087008_010 Hb_000189_060 Hb_000189_060 Hb_004640_040--Hb_000189_060 Hb_000513_080 Hb_000513_080 Hb_004640_040--Hb_000513_080 Hb_000123_100 Hb_000123_100 Hb_004640_040--Hb_000123_100 Hb_005892_070 Hb_005892_070 Hb_004640_040--Hb_005892_070 Hb_134312_010--Hb_087008_010 Hb_134312_010--Hb_000189_060 Hb_134312_010--Hb_000513_080 Hb_134312_010--Hb_000123_100 Hb_134312_010--Hb_005892_070 Hb_087008_010--Hb_000189_060 Hb_087008_010--Hb_000513_080 Hb_087008_010--Hb_005892_070 Hb_087008_010--Hb_000123_100 Hb_000189_060--Hb_000513_080 Hb_071379_010 Hb_071379_010 Hb_000189_060--Hb_071379_010 Hb_005743_090 Hb_005743_090 Hb_000189_060--Hb_005743_090 Hb_000513_080--Hb_071379_010 Hb_000513_080--Hb_000123_100 Hb_113823_010 Hb_113823_010 Hb_000123_100--Hb_113823_010 Hb_059301_010 Hb_059301_010 Hb_000123_100--Hb_059301_010 Hb_160233_020 Hb_160233_020 Hb_000123_100--Hb_160233_020 Hb_004800_050 Hb_004800_050 Hb_000123_100--Hb_004800_050 Hb_001214_170 Hb_001214_170 Hb_000123_100--Hb_001214_170 Hb_000905_070 Hb_000905_070 Hb_005892_070--Hb_000905_070 Hb_000153_040 Hb_000153_040 Hb_005892_070--Hb_000153_040 Hb_001125_030 Hb_001125_030 Hb_005892_070--Hb_001125_030 Hb_002759_130 Hb_002759_130 Hb_005892_070--Hb_002759_130 Hb_000200_060 Hb_000200_060 Hb_005892_070--Hb_000200_060 Hb_000345_480 Hb_000345_480 Hb_005892_070--Hb_000345_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.459395 0 0.435475 0 0.950535 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis