Hb_004642_010

Information

Type -
Description -
Location Contig4642: 3791-5985
Sequence    

Annotation

kegg
ID csv:101203928
description uncharacterized LOC101203928
nr
ID AAV85747.1
description Integrase core domain, putative [Oryza sativa Japonica Group]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID Q5R1J2
description Integrase core domain, putative OS=Oryza sativa subsp. japonica GN=LOC_Os11g18580 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004642_010 0.0 - - Integrase core domain, putative [Oryza sativa Japonica Group]
2 Hb_138358_010 0.0003620424 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
3 Hb_003147_030 0.0005952706 transcription factor TF Family: Jumonji transcription factor, putative [Ricinus communis]
4 Hb_000270_570 0.0025443668 - - PREDICTED: peroxidase 65-like [Jatropha curcas]
5 Hb_004724_110 0.0035394454 - - alpha-1,2-fucosyltransferase [Populus tremula x Populus alba]
6 Hb_000922_230 0.0068993353 - - -
7 Hb_001768_030 0.0086701475 - - -
8 Hb_001827_020 0.0126153672 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_011269_050 0.0133950919 - - -
10 Hb_077421_010 0.0152854086 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
11 Hb_002028_080 0.0155015636 - - hypothetical protein JCGZ_07571 [Jatropha curcas]
12 Hb_000017_010 0.0159018013 - - -
13 Hb_003494_170 0.0162654622 - - -
14 Hb_004994_060 0.0188302144 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
15 Hb_007945_040 0.0496533135 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
16 Hb_006642_010 0.0700517932 - - -
17 Hb_111985_020 0.1255845451 - - -
18 Hb_002659_100 0.1270818652 - - hypothetical protein OsI_37193 [Oryza sativa Indica Group]
19 Hb_000640_010 0.1312128587 - - PREDICTED: histidine kinase CKI1 [Jatropha curcas]
20 Hb_011639_140 0.1330867119 transcription factor TF Family: M-type hypothetical protein JCGZ_09931 [Jatropha curcas]

Gene co-expression network

sample Hb_004642_010 Hb_004642_010 Hb_138358_010 Hb_138358_010 Hb_004642_010--Hb_138358_010 Hb_003147_030 Hb_003147_030 Hb_004642_010--Hb_003147_030 Hb_000270_570 Hb_000270_570 Hb_004642_010--Hb_000270_570 Hb_004724_110 Hb_004724_110 Hb_004642_010--Hb_004724_110 Hb_000922_230 Hb_000922_230 Hb_004642_010--Hb_000922_230 Hb_001768_030 Hb_001768_030 Hb_004642_010--Hb_001768_030 Hb_138358_010--Hb_003147_030 Hb_138358_010--Hb_000270_570 Hb_138358_010--Hb_004724_110 Hb_138358_010--Hb_000922_230 Hb_138358_010--Hb_001768_030 Hb_003147_030--Hb_000270_570 Hb_003147_030--Hb_004724_110 Hb_003147_030--Hb_000922_230 Hb_003147_030--Hb_001768_030 Hb_000270_570--Hb_004724_110 Hb_000270_570--Hb_000922_230 Hb_000270_570--Hb_001768_030 Hb_004724_110--Hb_000922_230 Hb_004724_110--Hb_001768_030 Hb_000922_230--Hb_001768_030 Hb_001827_020 Hb_001827_020 Hb_000922_230--Hb_001827_020 Hb_011269_050 Hb_011269_050 Hb_000922_230--Hb_011269_050 Hb_001768_030--Hb_001827_020 Hb_001768_030--Hb_011269_050 Hb_077421_010 Hb_077421_010 Hb_001768_030--Hb_077421_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0126102 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00899029 0

CAGE analysis