Hb_004645_050

Information

Type -
Description -
Location Contig4645: 47924-48622
Sequence    

Annotation

kegg
ID pop:POPTR_0010s17540g
description POPTRDRAFT_833711; zinc finger family protein
nr
ID XP_012067657.1
description PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
swissprot
ID P0CH30
description E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1
trembl
ID A0A067LAW3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15616 PE=4 SV=1
Gene Ontology
ID GO:0005515
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004645_050 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
2 Hb_000977_080 0.0607027192 - - type II inositol 5-phosphatase, putative [Ricinus communis]
3 Hb_001235_210 0.0670117295 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_000189_270 0.0673820325 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]
5 Hb_002311_350 0.068683074 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
6 Hb_000531_020 0.0827365359 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
7 Hb_002307_030 0.0846681639 - - 40S ribosomal protein S15D [Hevea brasiliensis]
8 Hb_003551_020 0.0847381673 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
9 Hb_000380_190 0.086218246 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
10 Hb_001828_090 0.0864540131 - - prohibitin, putative [Ricinus communis]
11 Hb_003878_190 0.0871494105 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
12 Hb_000376_050 0.0878060941 - - polyadenylate-binding protein, putative [Ricinus communis]
13 Hb_003018_200 0.0894085956 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
14 Hb_002374_490 0.0903252393 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001824_070 0.0904648691 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
16 Hb_000970_010 0.0909178545 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
17 Hb_000392_270 0.0912418631 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
18 Hb_011465_040 0.0925580054 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]
19 Hb_000703_140 0.0932297002 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
20 Hb_002296_060 0.0936645679 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_004645_050 Hb_004645_050 Hb_000977_080 Hb_000977_080 Hb_004645_050--Hb_000977_080 Hb_001235_210 Hb_001235_210 Hb_004645_050--Hb_001235_210 Hb_000189_270 Hb_000189_270 Hb_004645_050--Hb_000189_270 Hb_002311_350 Hb_002311_350 Hb_004645_050--Hb_002311_350 Hb_000531_020 Hb_000531_020 Hb_004645_050--Hb_000531_020 Hb_002307_030 Hb_002307_030 Hb_004645_050--Hb_002307_030 Hb_000392_270 Hb_000392_270 Hb_000977_080--Hb_000392_270 Hb_003551_020 Hb_003551_020 Hb_000977_080--Hb_003551_020 Hb_000045_130 Hb_000045_130 Hb_000977_080--Hb_000045_130 Hb_001369_650 Hb_001369_650 Hb_000977_080--Hb_001369_650 Hb_000019_230 Hb_000019_230 Hb_000977_080--Hb_000019_230 Hb_001477_110 Hb_001477_110 Hb_001235_210--Hb_001477_110 Hb_000580_080 Hb_000580_080 Hb_001235_210--Hb_000580_080 Hb_001235_210--Hb_002311_350 Hb_001824_070 Hb_001824_070 Hb_001235_210--Hb_001824_070 Hb_000380_190 Hb_000380_190 Hb_001235_210--Hb_000380_190 Hb_000189_270--Hb_002311_350 Hb_000189_270--Hb_000380_190 Hb_001512_070 Hb_001512_070 Hb_000189_270--Hb_001512_070 Hb_000189_270--Hb_000977_080 Hb_002374_490 Hb_002374_490 Hb_000189_270--Hb_002374_490 Hb_002311_350--Hb_000380_190 Hb_002311_350--Hb_001477_110 Hb_005618_140 Hb_005618_140 Hb_002311_350--Hb_005618_140 Hb_002311_350--Hb_001824_070 Hb_000025_530 Hb_000025_530 Hb_000531_020--Hb_000025_530 Hb_000260_080 Hb_000260_080 Hb_000531_020--Hb_000260_080 Hb_000883_050 Hb_000883_050 Hb_000531_020--Hb_000883_050 Hb_000703_140 Hb_000703_140 Hb_000531_020--Hb_000703_140 Hb_000260_050 Hb_000260_050 Hb_000531_020--Hb_000260_050 Hb_001828_090 Hb_001828_090 Hb_000531_020--Hb_001828_090 Hb_001243_050 Hb_001243_050 Hb_002307_030--Hb_001243_050 Hb_002307_030--Hb_002374_490 Hb_000156_130 Hb_000156_130 Hb_002307_030--Hb_000156_130 Hb_023732_070 Hb_023732_070 Hb_002307_030--Hb_023732_070 Hb_002307_030--Hb_002311_350 Hb_002307_030--Hb_000977_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
199.365 106.154 47.0506 51.3692 238.993 240.814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
252.602 435.207 194.648 83.7064 62.6317

CAGE analysis