Hb_004648_030

Information

Type -
Description -
Location Contig4648: 30039-33451
Sequence    

Annotation

kegg
ID rcu:RCOM_1613710
description dimethyladenosine transferase, putative (EC:2.1.1.48)
nr
ID XP_012083490.1
description PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
swissprot
ID Q6ME80
description Ribosomal RNA small subunit methyltransferase A OS=Protochlamydia amoebophila (strain UWE25) GN=rsmA PE=3 SV=2
trembl
ID A0A067K8U9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14466 PE=4 SV=1
Gene Ontology
ID GO:0000179
description probable dimethyladenosine transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43922: 30068-33613
cDNA
(Sanger)
(ID:Location)		 001_I18.ab1: 30086-32715

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004648_030 0.0 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
2 Hb_000270_280 0.0924538976 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
3 Hb_004223_270 0.1150387374 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
4 Hb_000334_050 0.115342198 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
5 Hb_003680_090 0.1233270535 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
6 Hb_004162_270 0.1245514302 - - PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000940_030 0.1269657162 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
8 Hb_000310_060 0.1279907968 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
9 Hb_004502_010 0.1362945667 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
10 Hb_005917_020 0.1374075427 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
11 Hb_010632_020 0.1385117616 - - hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
12 Hb_001865_010 0.1393070212 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
13 Hb_000254_110 0.1395806867 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
14 Hb_022425_050 0.1400247401 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
15 Hb_000307_070 0.1423149764 - - protein kinase, putative [Ricinus communis]
16 Hb_000933_110 0.1432673997 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
17 Hb_003915_020 0.1441914022 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
18 Hb_074109_010 0.1465584926 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
19 Hb_005731_100 0.1469266886 - - monovalent cation:proton antiporter, putative [Ricinus communis]
20 Hb_003055_070 0.1473227636 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004648_030 Hb_004648_030 Hb_000270_280 Hb_000270_280 Hb_004648_030--Hb_000270_280 Hb_004223_270 Hb_004223_270 Hb_004648_030--Hb_004223_270 Hb_000334_050 Hb_000334_050 Hb_004648_030--Hb_000334_050 Hb_003680_090 Hb_003680_090 Hb_004648_030--Hb_003680_090 Hb_004162_270 Hb_004162_270 Hb_004648_030--Hb_004162_270 Hb_000940_030 Hb_000940_030 Hb_004648_030--Hb_000940_030 Hb_000310_060 Hb_000310_060 Hb_000270_280--Hb_000310_060 Hb_000270_280--Hb_003680_090 Hb_000270_280--Hb_000940_030 Hb_000270_280--Hb_004162_270 Hb_005784_030 Hb_005784_030 Hb_000270_280--Hb_005784_030 Hb_000005_100 Hb_000005_100 Hb_004223_270--Hb_000005_100 Hb_000933_110 Hb_000933_110 Hb_004223_270--Hb_000933_110 Hb_004223_270--Hb_000334_050 Hb_022425_050 Hb_022425_050 Hb_004223_270--Hb_022425_050 Hb_001649_030 Hb_001649_030 Hb_004223_270--Hb_001649_030 Hb_005116_100 Hb_005116_100 Hb_004223_270--Hb_005116_100 Hb_000334_050--Hb_022425_050 Hb_000334_050--Hb_000933_110 Hb_027445_100 Hb_027445_100 Hb_000334_050--Hb_027445_100 Hb_005731_100 Hb_005731_100 Hb_000334_050--Hb_005731_100 Hb_000327_200 Hb_000327_200 Hb_000334_050--Hb_000327_200 Hb_005917_020 Hb_005917_020 Hb_003680_090--Hb_005917_020 Hb_002811_310 Hb_002811_310 Hb_003680_090--Hb_002811_310 Hb_003680_090--Hb_004162_270 Hb_001863_180 Hb_001863_180 Hb_003680_090--Hb_001863_180 Hb_003053_070 Hb_003053_070 Hb_003680_090--Hb_003053_070 Hb_000684_200 Hb_000684_200 Hb_004162_270--Hb_000684_200 Hb_004162_270--Hb_003053_070 Hb_000395_010 Hb_000395_010 Hb_004162_270--Hb_000395_010 Hb_004162_270--Hb_005784_030 Hb_010868_040 Hb_010868_040 Hb_000940_030--Hb_010868_040 Hb_000940_030--Hb_000310_060 Hb_003055_070 Hb_003055_070 Hb_000940_030--Hb_003055_070 Hb_000996_080 Hb_000996_080 Hb_000940_030--Hb_000996_080 Hb_001365_030 Hb_001365_030 Hb_000940_030--Hb_001365_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.412664 4.47099 12.2172 3.59713 0.554693 0.371477
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.28606 1.61849 0.503116 3.80245 13.1254

CAGE analysis