Hb_004648_070

Information

Type -
Description -
Location Contig4648: 47304-48986
Sequence    

Annotation

kegg
ID rcu:RCOM_1613760
description ubiquitin-protein ligase, putative
nr
ID XP_002511794.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q8GWV5
description U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2
trembl
ID B9RDK5
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1613760 PE=4 SV=1
Gene Ontology
ID GO:0005515
description vacuolar protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43924: 45698-49156 , PASA_asmbl_43925: 46670-46969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004648_070 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_006745_010 0.1536870851 - - PREDICTED: uncharacterized protein LOC105640095 [Jatropha curcas]
3 Hb_001514_060 0.1676254318 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
4 Hb_012038_010 0.1710034497 - - phospholipid-transporting atpase, putative [Ricinus communis]
5 Hb_002387_070 0.171962694 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial [Jatropha curcas]
6 Hb_000139_180 0.1722102001 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
7 Hb_000015_160 0.1770494893 - - Heat shock cognate 70 kDa protein 1 [Triticum urartu]
8 Hb_007423_030 0.1777599026 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
9 Hb_000732_080 0.1842207364 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g45440 [Jatropha curcas]
10 Hb_000460_060 0.1889450461 - - importin beta-1, putative [Ricinus communis]
11 Hb_004800_240 0.1908120927 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
12 Hb_030827_060 0.1942892921 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-2b [Jatropha curcas]
13 Hb_000302_300 0.1948634324 - - PREDICTED: heat shock protein 83 [Populus euphratica]
14 Hb_003018_040 0.1984103254 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
15 Hb_001079_030 0.1994299325 - - PREDICTED: splicing factor U2af small subunit B-like [Jatropha curcas]
16 Hb_009674_080 0.1998576283 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
17 Hb_000991_050 0.2048382504 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
18 Hb_001565_020 0.2056579311 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial, partial [Jatropha curcas]
19 Hb_012753_040 0.2057937241 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
20 Hb_006054_030 0.2059082602 - - PREDICTED: protein GPR107-like [Jatropha curcas]

Gene co-expression network

sample Hb_004648_070 Hb_004648_070 Hb_006745_010 Hb_006745_010 Hb_004648_070--Hb_006745_010 Hb_001514_060 Hb_001514_060 Hb_004648_070--Hb_001514_060 Hb_012038_010 Hb_012038_010 Hb_004648_070--Hb_012038_010 Hb_002387_070 Hb_002387_070 Hb_004648_070--Hb_002387_070 Hb_000139_180 Hb_000139_180 Hb_004648_070--Hb_000139_180 Hb_000015_160 Hb_000015_160 Hb_004648_070--Hb_000015_160 Hb_030827_060 Hb_030827_060 Hb_006745_010--Hb_030827_060 Hb_000422_110 Hb_000422_110 Hb_006745_010--Hb_000422_110 Hb_001307_010 Hb_001307_010 Hb_006745_010--Hb_001307_010 Hb_000979_240 Hb_000979_240 Hb_006745_010--Hb_000979_240 Hb_002999_060 Hb_002999_060 Hb_006745_010--Hb_002999_060 Hb_162074_010 Hb_162074_010 Hb_001514_060--Hb_162074_010 Hb_009897_020 Hb_009897_020 Hb_001514_060--Hb_009897_020 Hb_000488_020 Hb_000488_020 Hb_001514_060--Hb_000488_020 Hb_000732_080 Hb_000732_080 Hb_001514_060--Hb_000732_080 Hb_002760_040 Hb_002760_040 Hb_001514_060--Hb_002760_040 Hb_044653_020 Hb_044653_020 Hb_012038_010--Hb_044653_020 Hb_009674_080 Hb_009674_080 Hb_012038_010--Hb_009674_080 Hb_004324_060 Hb_004324_060 Hb_012038_010--Hb_004324_060 Hb_003895_020 Hb_003895_020 Hb_012038_010--Hb_003895_020 Hb_002942_110 Hb_002942_110 Hb_012038_010--Hb_002942_110 Hb_000526_060 Hb_000526_060 Hb_012038_010--Hb_000526_060 Hb_012368_100 Hb_012368_100 Hb_002387_070--Hb_012368_100 Hb_002387_070--Hb_044653_020 Hb_000460_060 Hb_000460_060 Hb_002387_070--Hb_000460_060 Hb_000896_060 Hb_000896_060 Hb_002387_070--Hb_000896_060 Hb_000117_070 Hb_000117_070 Hb_002387_070--Hb_000117_070 Hb_002387_070--Hb_000526_060 Hb_000671_060 Hb_000671_060 Hb_000139_180--Hb_000671_060 Hb_020805_100 Hb_020805_100 Hb_000139_180--Hb_020805_100 Hb_000139_180--Hb_012038_010 Hb_000732_070 Hb_000732_070 Hb_000139_180--Hb_000732_070 Hb_001911_010 Hb_001911_010 Hb_000139_180--Hb_001911_010 Hb_000334_130 Hb_000334_130 Hb_000139_180--Hb_000334_130 Hb_000991_050 Hb_000991_050 Hb_000015_160--Hb_000991_050 Hb_012753_040 Hb_012753_040 Hb_000015_160--Hb_012753_040 Hb_000015_160--Hb_002387_070 Hb_002774_150 Hb_002774_150 Hb_000015_160--Hb_002774_150 Hb_000015_160--Hb_009674_080 Hb_000631_140 Hb_000631_140 Hb_000015_160--Hb_000631_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.92382 62.4396 10.7605 23.2557 38.8346 6.87646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.80623 3.5117 9.75453 8.37229 10.0056

CAGE analysis