Hb_004648_090

Information

Type -
Description -
Location Contig4648: 65311-68581
Sequence    

Annotation

kegg
ID rcu:RCOM_1613770
description peroxisomal biogenesis factor, putative
nr
ID XP_002511795.1
description peroxisomal biogenesis factor, putative [Ricinus communis]
swissprot
ID Q9LQ73
description Peroxisomal membrane protein 11C OS=Arabidopsis thaliana GN=PEX11C PE=1 SV=1
trembl
ID B9RDK6
description Peroxisomal biogenesis factor, putative OS=Ricinus communis GN=RCOM_1613770 PE=4 SV=1
Gene Ontology
ID GO:0005779
description peroxisomal membrane protein 11c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43926: 65296-68548 , PASA_asmbl_43927: 65265-68548 , PASA_asmbl_43928: 65288-68548 , PASA_asmbl_43929: 66960-67519
cDNA
(Sanger)
(ID:Location)		 028_L06.ab1: 65328-68202

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004648_090 0.0 - - peroxisomal biogenesis factor, putative [Ricinus communis]
2 Hb_004870_050 0.0731394789 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
3 Hb_002110_160 0.0790462257 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
4 Hb_002228_110 0.0792827119 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
5 Hb_005389_100 0.0807954633 - - PREDICTED: methyltransferase-like protein 5 isoform X2 [Jatropha curcas]
6 Hb_010998_040 0.0808509809 transcription factor TF Family: MYB myb3r3, putative [Ricinus communis]
7 Hb_001671_040 0.0894215572 - - PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Populus euphratica]
8 Hb_003682_030 0.0909517874 - - hypothetical protein CICLE_v10020876mg [Citrus clementina]
9 Hb_006615_050 0.0912324298 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
10 Hb_000375_290 0.0916064644 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
11 Hb_001005_020 0.0943358357 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
12 Hb_000282_090 0.0950260777 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
13 Hb_001776_060 0.0968291448 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
14 Hb_000352_350 0.0983210204 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
15 Hb_001953_070 0.100945832 - - PREDICTED: RNA pseudouridine synthase 7 isoform X2 [Jatropha curcas]
16 Hb_002909_040 0.1010923578 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
17 Hb_000329_590 0.1022625685 - - catalytic, putative [Ricinus communis]
18 Hb_000866_450 0.1032532242 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
19 Hb_000358_230 0.1035237617 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
20 Hb_000207_200 0.1036567055 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_004648_090 Hb_004648_090 Hb_004870_050 Hb_004870_050 Hb_004648_090--Hb_004870_050 Hb_002110_160 Hb_002110_160 Hb_004648_090--Hb_002110_160 Hb_002228_110 Hb_002228_110 Hb_004648_090--Hb_002228_110 Hb_005389_100 Hb_005389_100 Hb_004648_090--Hb_005389_100 Hb_010998_040 Hb_010998_040 Hb_004648_090--Hb_010998_040 Hb_001671_040 Hb_001671_040 Hb_004648_090--Hb_001671_040 Hb_060094_020 Hb_060094_020 Hb_004870_050--Hb_060094_020 Hb_003927_040 Hb_003927_040 Hb_004870_050--Hb_003927_040 Hb_000094_090 Hb_000094_090 Hb_004870_050--Hb_000094_090 Hb_004870_050--Hb_002110_160 Hb_000282_090 Hb_000282_090 Hb_004870_050--Hb_000282_090 Hb_002110_160--Hb_000282_090 Hb_010775_030 Hb_010775_030 Hb_002110_160--Hb_010775_030 Hb_010287_020 Hb_010287_020 Hb_002110_160--Hb_010287_020 Hb_000207_200 Hb_000207_200 Hb_002110_160--Hb_000207_200 Hb_000868_120 Hb_000868_120 Hb_002110_160--Hb_000868_120 Hb_001898_240 Hb_001898_240 Hb_002228_110--Hb_001898_240 Hb_003682_030 Hb_003682_030 Hb_002228_110--Hb_003682_030 Hb_006261_090 Hb_006261_090 Hb_002228_110--Hb_006261_090 Hb_002228_110--Hb_001671_040 Hb_001225_030 Hb_001225_030 Hb_002228_110--Hb_001225_030 Hb_000329_590 Hb_000329_590 Hb_005389_100--Hb_000329_590 Hb_000098_140 Hb_000098_140 Hb_005389_100--Hb_000098_140 Hb_002067_030 Hb_002067_030 Hb_005389_100--Hb_002067_030 Hb_005389_100--Hb_001671_040 Hb_000525_100 Hb_000525_100 Hb_005389_100--Hb_000525_100 Hb_001804_110 Hb_001804_110 Hb_010998_040--Hb_001804_110 Hb_001140_030 Hb_001140_030 Hb_010998_040--Hb_001140_030 Hb_000959_230 Hb_000959_230 Hb_010998_040--Hb_000959_230 Hb_010362_030 Hb_010362_030 Hb_010998_040--Hb_010362_030 Hb_000139_190 Hb_000139_190 Hb_010998_040--Hb_000139_190 Hb_000130_420 Hb_000130_420 Hb_010998_040--Hb_000130_420 Hb_000035_250 Hb_000035_250 Hb_001671_040--Hb_000035_250 Hb_001953_070 Hb_001953_070 Hb_001671_040--Hb_001953_070 Hb_006615_050 Hb_006615_050 Hb_001671_040--Hb_006615_050 Hb_008225_090 Hb_008225_090 Hb_001671_040--Hb_008225_090 Hb_000010_110 Hb_000010_110 Hb_001671_040--Hb_000010_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.4772 109.346 130.195 60.6705 77.8677 40.4196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.4541 76.852 32.6174 38.8861 47.2784

CAGE analysis