Hb_004648_110

Information

Type -
Description -
Location Contig4648: 73099-77193
Sequence    

Annotation

kegg
ID rcu:RCOM_1613790
description ATP binding protein, putative
nr
ID XP_002511797.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9ZPH9
description Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=2 SV=1
trembl
ID B9RDK8
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1613790 PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable methyltransferase pmt15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43934: 73442-73840 , PASA_asmbl_43935: 76096-76894
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004648_110 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_001098_030 0.1541536217 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Populus euphratica]
3 Hb_012239_050 0.1699409368 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003911_030 0.224972739 - - glutamate dehydrogenase, putative [Ricinus communis]
5 Hb_000271_080 0.237360404 - - hypothetical protein POPTR_0006s08460g [Populus trichocarpa]
6 Hb_002603_110 0.2404787771 - - PREDICTED: uncharacterized protein LOC105646325 [Jatropha curcas]
7 Hb_007254_030 0.2687373814 - - kinase, putative [Ricinus communis]
8 Hb_003680_140 0.2739701946 - - PREDICTED: uncharacterized protein LOC105121770 [Populus euphratica]
9 Hb_001975_040 0.2774577376 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
10 Hb_007425_020 0.2782527871 transcription factor TF Family: ERF PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like [Jatropha curcas]
11 Hb_000008_060 0.283948862 - - protein binding protein, putative [Ricinus communis]
12 Hb_010691_010 0.2909967822 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
13 Hb_000679_030 0.2922701825 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5 [Jatropha curcas]
14 Hb_000099_140 0.2974653679 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
15 Hb_000500_050 0.2974684946 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
16 Hb_000386_050 0.2995894823 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Jatropha curcas]
17 Hb_004024_020 0.3002480732 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_069338_010 0.3009045149 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006836_030 0.3020151218 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
20 Hb_002527_040 0.3022342399 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]

Gene co-expression network

sample Hb_004648_110 Hb_004648_110 Hb_001098_030 Hb_001098_030 Hb_004648_110--Hb_001098_030 Hb_012239_050 Hb_012239_050 Hb_004648_110--Hb_012239_050 Hb_003911_030 Hb_003911_030 Hb_004648_110--Hb_003911_030 Hb_000271_080 Hb_000271_080 Hb_004648_110--Hb_000271_080 Hb_002603_110 Hb_002603_110 Hb_004648_110--Hb_002603_110 Hb_007254_030 Hb_007254_030 Hb_004648_110--Hb_007254_030 Hb_006836_030 Hb_006836_030 Hb_001098_030--Hb_006836_030 Hb_001975_040 Hb_001975_040 Hb_001098_030--Hb_001975_040 Hb_003181_060 Hb_003181_060 Hb_001098_030--Hb_003181_060 Hb_001098_030--Hb_002603_110 Hb_001098_030--Hb_012239_050 Hb_010691_010 Hb_010691_010 Hb_012239_050--Hb_010691_010 Hb_012132_020 Hb_012132_020 Hb_012239_050--Hb_012132_020 Hb_000679_030 Hb_000679_030 Hb_012239_050--Hb_000679_030 Hb_012239_050--Hb_002603_110 Hb_003911_030--Hb_000271_080 Hb_091889_020 Hb_091889_020 Hb_003911_030--Hb_091889_020 Hb_002205_170 Hb_002205_170 Hb_003911_030--Hb_002205_170 Hb_000813_160 Hb_000813_160 Hb_003911_030--Hb_000813_160 Hb_003911_030--Hb_002603_110 Hb_023344_020 Hb_023344_020 Hb_000271_080--Hb_023344_020 Hb_001770_010 Hb_001770_010 Hb_000271_080--Hb_001770_010 Hb_000318_080 Hb_000318_080 Hb_000271_080--Hb_000318_080 Hb_092706_010 Hb_092706_010 Hb_000271_080--Hb_092706_010 Hb_001975_030 Hb_001975_030 Hb_002603_110--Hb_001975_030 Hb_000483_100 Hb_000483_100 Hb_002603_110--Hb_000483_100 Hb_000008_060 Hb_000008_060 Hb_002603_110--Hb_000008_060 Hb_000086_390 Hb_000086_390 Hb_002603_110--Hb_000086_390 Hb_003226_200 Hb_003226_200 Hb_002603_110--Hb_003226_200 Hb_032568_010 Hb_032568_010 Hb_002603_110--Hb_032568_010 Hb_000416_030 Hb_000416_030 Hb_007254_030--Hb_000416_030 Hb_007254_030--Hb_001098_030 Hb_000523_110 Hb_000523_110 Hb_007254_030--Hb_000523_110 Hb_003687_220 Hb_003687_220 Hb_007254_030--Hb_003687_220 Hb_012098_090 Hb_012098_090 Hb_007254_030--Hb_012098_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.11928 4.83513 1.76337 12.8288 0 0.00861151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.16424 13.7633 1.35083 3.2623 12.2171

CAGE analysis