Hb_004650_050

Information

Type -
Description -
Location Contig4650: 57221-70312
Sequence    

Annotation

kegg
ID rcu:RCOM_1031080
description hypothetical protein
nr
ID XP_012078175.1
description PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067KCP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12055 PE=4 SV=1
Gene Ontology
ID GO:0016757
description o-fucosyltransferase family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44025: 61874-62329
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004650_050 0.0 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
2 Hb_009838_070 0.0738683341 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
3 Hb_000711_030 0.0793713883 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
4 Hb_091433_050 0.0832835579 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
5 Hb_003680_060 0.0956501713 - - hypothetical protein VITISV_022322 [Vitis vinifera]
6 Hb_009393_130 0.1055500986 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
7 Hb_004096_210 0.1067361148 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
8 Hb_147378_010 0.1125934725 - - -
9 Hb_000116_220 0.1132596801 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002681_210 0.1138627578 - - PREDICTED: uncharacterized protein LOC105633686 [Jatropha curcas]
11 Hb_000327_260 0.1178762065 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000749_260 0.1230424064 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
13 Hb_005210_010 0.1242319581 - - PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
14 Hb_000618_110 0.124323339 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
15 Hb_019654_180 0.1247798951 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
16 Hb_000190_230 0.1250464552 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
17 Hb_000390_210 0.1263666431 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
18 Hb_000020_090 0.1303697393 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
19 Hb_000049_100 0.1310773087 - - Photosystem II reaction center W protein, putative [Ricinus communis]
20 Hb_005000_110 0.1315499801 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004650_050 Hb_004650_050 Hb_009838_070 Hb_009838_070 Hb_004650_050--Hb_009838_070 Hb_000711_030 Hb_000711_030 Hb_004650_050--Hb_000711_030 Hb_091433_050 Hb_091433_050 Hb_004650_050--Hb_091433_050 Hb_003680_060 Hb_003680_060 Hb_004650_050--Hb_003680_060 Hb_009393_130 Hb_009393_130 Hb_004650_050--Hb_009393_130 Hb_004096_210 Hb_004096_210 Hb_004650_050--Hb_004096_210 Hb_000327_260 Hb_000327_260 Hb_009838_070--Hb_000327_260 Hb_009838_070--Hb_009393_130 Hb_009838_070--Hb_003680_060 Hb_009838_070--Hb_000711_030 Hb_009838_070--Hb_004096_210 Hb_001159_070 Hb_001159_070 Hb_000711_030--Hb_001159_070 Hb_000950_020 Hb_000950_020 Hb_000711_030--Hb_000950_020 Hb_000711_030--Hb_000327_260 Hb_005000_110 Hb_005000_110 Hb_000711_030--Hb_005000_110 Hb_002636_030 Hb_002636_030 Hb_091433_050--Hb_002636_030 Hb_091433_050--Hb_003680_060 Hb_091433_050--Hb_009393_130 Hb_003605_060 Hb_003605_060 Hb_091433_050--Hb_003605_060 Hb_005210_010 Hb_005210_010 Hb_091433_050--Hb_005210_010 Hb_003680_060--Hb_009393_130 Hb_000116_220 Hb_000116_220 Hb_003680_060--Hb_000116_220 Hb_003680_060--Hb_000711_030 Hb_007803_040 Hb_007803_040 Hb_009393_130--Hb_007803_040 Hb_009393_130--Hb_003605_060 Hb_010557_010 Hb_010557_010 Hb_009393_130--Hb_010557_010 Hb_002811_250 Hb_002811_250 Hb_009393_130--Hb_002811_250 Hb_000618_110 Hb_000618_110 Hb_004096_210--Hb_000618_110 Hb_004096_210--Hb_009393_130 Hb_004096_210--Hb_000327_260 Hb_000866_020 Hb_000866_020 Hb_004096_210--Hb_000866_020 Hb_000816_240 Hb_000816_240 Hb_004096_210--Hb_000816_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0981874 0.392261 4.32371 2.75816 0.0334652 0.0689592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.108437 0.319934 0.241498 0.170006 5.51487

CAGE analysis