Hb_004650_060

Information

Type -
Description -
Location Contig4650: 64706-68359
Sequence    

Annotation

kegg
ID osa:4341086
description Os06g0493000
nr
ID ADB85398.1
description putative retrotransposon protein [Phyllostachys edulis]
swissprot
ID P92523
description Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana GN=AtMg00860 PE=4 SV=1
trembl
ID D3IVQ8
description Putative retrotransposon protein OS=Phyllostachys edulis PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon unclassified

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44026: 68233-68455
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004650_060 0.0 - - putative retrotransposon protein [Phyllostachys edulis]
2 Hb_043708_010 0.1671144854 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
3 Hb_002534_030 0.1730574006 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
4 Hb_005588_110 0.190406334 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
5 Hb_000154_010 0.1978366362 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_005282_020 0.2095648967 - - hypothetical protein PRUPE_ppa019056mg, partial [Prunus persica]
7 Hb_000012_160 0.2120118594 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
8 Hb_003944_020 0.2165744688 - - PREDICTED: uncharacterized protein LOC105110580 [Populus euphratica]
9 Hb_008698_010 0.2181469413 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
10 Hb_000460_070 0.2252147733 - - luminal binding protein [Gossypium hirsutum]
11 Hb_067069_010 0.2267673373 - - hypothetical protein JCGZ_11524 [Jatropha curcas]
12 Hb_066487_010 0.2287422198 - - conserved hypothetical protein [Ricinus communis]
13 Hb_181026_010 0.2292947725 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
14 Hb_001229_020 0.2339490156 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
15 Hb_011386_020 0.2343261505 - - unnamed protein product [Vitis vinifera]
16 Hb_002791_020 0.2352106373 - - hypothetical protein AALP_AA5G271700 [Arabis alpina]
17 Hb_131102_010 0.2355566744 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_003544_010 0.237779167 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_000683_080 0.2383662089 - - hypothetical protein EUGRSUZ_G013602, partial [Eucalyptus grandis]
20 Hb_000495_080 0.2414309516 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_004650_060 Hb_004650_060 Hb_043708_010 Hb_043708_010 Hb_004650_060--Hb_043708_010 Hb_002534_030 Hb_002534_030 Hb_004650_060--Hb_002534_030 Hb_005588_110 Hb_005588_110 Hb_004650_060--Hb_005588_110 Hb_000154_010 Hb_000154_010 Hb_004650_060--Hb_000154_010 Hb_005282_020 Hb_005282_020 Hb_004650_060--Hb_005282_020 Hb_000012_160 Hb_000012_160 Hb_004650_060--Hb_000012_160 Hb_019656_010 Hb_019656_010 Hb_043708_010--Hb_019656_010 Hb_131102_010 Hb_131102_010 Hb_043708_010--Hb_131102_010 Hb_002791_020 Hb_002791_020 Hb_043708_010--Hb_002791_020 Hb_043708_010--Hb_000154_010 Hb_008730_010 Hb_008730_010 Hb_043708_010--Hb_008730_010 Hb_002534_030--Hb_005588_110 Hb_008698_010 Hb_008698_010 Hb_002534_030--Hb_008698_010 Hb_067069_010 Hb_067069_010 Hb_002534_030--Hb_067069_010 Hb_002078_300 Hb_002078_300 Hb_002534_030--Hb_002078_300 Hb_001484_080 Hb_001484_080 Hb_002534_030--Hb_001484_080 Hb_000890_110 Hb_000890_110 Hb_002534_030--Hb_000890_110 Hb_000296_080 Hb_000296_080 Hb_005588_110--Hb_000296_080 Hb_005588_110--Hb_001484_080 Hb_000754_050 Hb_000754_050 Hb_005588_110--Hb_000754_050 Hb_000402_170 Hb_000402_170 Hb_005588_110--Hb_000402_170 Hb_006637_080 Hb_006637_080 Hb_005588_110--Hb_006637_080 Hb_133820_010 Hb_133820_010 Hb_000154_010--Hb_133820_010 Hb_006132_030 Hb_006132_030 Hb_000154_010--Hb_006132_030 Hb_000160_320 Hb_000160_320 Hb_000154_010--Hb_000160_320 Hb_036988_010 Hb_036988_010 Hb_000154_010--Hb_036988_010 Hb_003544_010 Hb_003544_010 Hb_005282_020--Hb_003544_010 Hb_000676_200 Hb_000676_200 Hb_005282_020--Hb_000676_200 Hb_005282_020--Hb_000012_160 Hb_000608_170 Hb_000608_170 Hb_005282_020--Hb_000608_170 Hb_002685_060 Hb_002685_060 Hb_005282_020--Hb_002685_060 Hb_000318_130 Hb_000318_130 Hb_005282_020--Hb_000318_130 Hb_000012_160--Hb_003544_010 Hb_002518_120 Hb_002518_120 Hb_000012_160--Hb_002518_120 Hb_007894_220 Hb_007894_220 Hb_000012_160--Hb_007894_220 Hb_000012_160--Hb_002685_060 Hb_002282_070 Hb_002282_070 Hb_000012_160--Hb_002282_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0584633 0.0348657 0.0365407 0.0469596 0.0181749 0.141417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0823407 0.0647967 0.268789 0.0685132 0.691894

CAGE analysis