Hb_004650_070

Information

Type -
Description -
Location Contig4650: 77210-79522
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44030: 75853-92932
cDNA
(Sanger)
(ID:Location)		 012_D19.ab1: 75853-92932 , 045_H19.ab1: 75853-92932

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004650_070 0.0 - - -
2 Hb_000809_050 0.1064410037 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639663 isoform X2 [Jatropha curcas]
3 Hb_000085_310 0.120020301 - - hypothetical protein JCGZ_00974 [Jatropha curcas]
4 Hb_000733_030 0.127443597 - - PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
5 Hb_005955_020 0.128956067 - - ring finger containing protein, putative [Ricinus communis]
6 Hb_002662_100 0.1362453452 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
7 Hb_028872_050 0.144159322 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
8 Hb_001220_040 0.1442877231 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
9 Hb_006452_060 0.1447559576 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
10 Hb_000008_250 0.1458017306 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001366_220 0.146955261 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005348_080 0.1546944496 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
13 Hb_010638_020 0.1548391413 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
14 Hb_002897_060 0.1610809593 - - PREDICTED: uncharacterized protein LOC105649233 [Jatropha curcas]
15 Hb_002392_040 0.1624719714 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000072_280 0.1639410969 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Jatropha curcas]
17 Hb_003057_120 0.1641272375 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
18 Hb_003209_020 0.1652215186 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]
19 Hb_002716_070 0.1657575978 - - PREDICTED: protein ABIL2 [Jatropha curcas]
20 Hb_005357_150 0.1658472088 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004650_070 Hb_004650_070 Hb_000809_050 Hb_000809_050 Hb_004650_070--Hb_000809_050 Hb_000085_310 Hb_000085_310 Hb_004650_070--Hb_000085_310 Hb_000733_030 Hb_000733_030 Hb_004650_070--Hb_000733_030 Hb_005955_020 Hb_005955_020 Hb_004650_070--Hb_005955_020 Hb_002662_100 Hb_002662_100 Hb_004650_070--Hb_002662_100 Hb_028872_050 Hb_028872_050 Hb_004650_070--Hb_028872_050 Hb_000304_020 Hb_000304_020 Hb_000809_050--Hb_000304_020 Hb_000072_280 Hb_000072_280 Hb_000809_050--Hb_000072_280 Hb_001366_220 Hb_001366_220 Hb_000809_050--Hb_001366_220 Hb_030982_040 Hb_030982_040 Hb_000809_050--Hb_030982_040 Hb_000809_050--Hb_000085_310 Hb_000085_310--Hb_001366_220 Hb_004108_050 Hb_004108_050 Hb_000085_310--Hb_004108_050 Hb_000809_040 Hb_000809_040 Hb_000085_310--Hb_000809_040 Hb_001366_230 Hb_001366_230 Hb_000085_310--Hb_001366_230 Hb_000085_310--Hb_002662_100 Hb_005357_150 Hb_005357_150 Hb_000085_310--Hb_005357_150 Hb_001349_010 Hb_001349_010 Hb_000733_030--Hb_001349_010 Hb_025087_010 Hb_025087_010 Hb_000733_030--Hb_025087_010 Hb_005000_290 Hb_005000_290 Hb_000733_030--Hb_005000_290 Hb_000733_030--Hb_000809_050 Hb_002897_060 Hb_002897_060 Hb_000733_030--Hb_002897_060 Hb_000008_250 Hb_000008_250 Hb_005955_020--Hb_000008_250 Hb_026988_020 Hb_026988_020 Hb_005955_020--Hb_026988_020 Hb_001538_110 Hb_001538_110 Hb_005955_020--Hb_001538_110 Hb_005955_020--Hb_005357_150 Hb_005955_020--Hb_000085_310 Hb_000313_380 Hb_000313_380 Hb_002662_100--Hb_000313_380 Hb_002662_100--Hb_001366_220 Hb_002662_100--Hb_000809_040 Hb_009026_050 Hb_009026_050 Hb_002662_100--Hb_009026_050 Hb_002662_100--Hb_001366_230 Hb_002111_050 Hb_002111_050 Hb_028872_050--Hb_002111_050 Hb_011224_080 Hb_011224_080 Hb_028872_050--Hb_011224_080 Hb_002659_140 Hb_002659_140 Hb_028872_050--Hb_002659_140 Hb_000352_110 Hb_000352_110 Hb_028872_050--Hb_000352_110 Hb_006816_290 Hb_006816_290 Hb_028872_050--Hb_006816_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.64505 0.992584 0.572038 0.446824 10.5271 4.69682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.43801 7.56636 8.94894 1.51789 1.16899

CAGE analysis