Hb_004650_090

Information

Type -
Description -
Location Contig4650: 82097-85302
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44030: 75853-92932
cDNA
(Sanger)
(ID:Location)		 012_D19.ab1: 75853-92932 , 045_H19.ab1: 75853-92932

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004650_090 0.0 - - -
2 Hb_000580_040 0.2321722777 - - -
3 Hb_005715_020 0.2428363982 - - PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas]
4 Hb_000062_500 0.2513211007 - - PREDICTED: urease-like [Zea mays]
5 Hb_007545_160 0.2531393447 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
6 Hb_043950_010 0.2541408803 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
7 Hb_173423_010 0.2571690945 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004410_060 0.2575547629 - - -
9 Hb_032018_010 0.2607657058 - - PREDICTED: uncharacterized protein LOC105778873 [Gossypium raimondii]
10 Hb_124976_010 0.2620292414 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
11 Hb_019859_030 0.2639225571 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
12 Hb_007139_010 0.2640029523 - - hypothetical protein POPTR_0016s134801g, partial [Populus trichocarpa]
13 Hb_012815_020 0.2642077884 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_000298_080 0.2642964684 - - -
15 Hb_027337_070 0.2671474794 - - hypothetical protein POPTR_0001s29030g [Populus trichocarpa]
16 Hb_000078_040 0.2684578179 - - PREDICTED: uncharacterized protein LOC104907366 [Beta vulgaris subsp. vulgaris]
17 Hb_010997_100 0.270981685 transcription factor TF Family: mTERF -
18 Hb_022348_020 0.2753122688 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
19 Hb_003581_040 0.2761227757 - - hypothetical protein PHAVU_002G080900g [Phaseolus vulgaris]
20 Hb_002871_200 0.2765381574 - - -

Gene co-expression network

sample Hb_004650_090 Hb_004650_090 Hb_000580_040 Hb_000580_040 Hb_004650_090--Hb_000580_040 Hb_005715_020 Hb_005715_020 Hb_004650_090--Hb_005715_020 Hb_000062_500 Hb_000062_500 Hb_004650_090--Hb_000062_500 Hb_007545_160 Hb_007545_160 Hb_004650_090--Hb_007545_160 Hb_043950_010 Hb_043950_010 Hb_004650_090--Hb_043950_010 Hb_173423_010 Hb_173423_010 Hb_004650_090--Hb_173423_010 Hb_000580_040--Hb_173423_010 Hb_000580_040--Hb_043950_010 Hb_000580_040--Hb_007545_160 Hb_004410_060 Hb_004410_060 Hb_000580_040--Hb_004410_060 Hb_124976_010 Hb_124976_010 Hb_000580_040--Hb_124976_010 Hb_019859_030 Hb_019859_030 Hb_000580_040--Hb_019859_030 Hb_007021_030 Hb_007021_030 Hb_005715_020--Hb_007021_030 Hb_018118_020 Hb_018118_020 Hb_005715_020--Hb_018118_020 Hb_010997_100 Hb_010997_100 Hb_005715_020--Hb_010997_100 Hb_097433_020 Hb_097433_020 Hb_005715_020--Hb_097433_020 Hb_001396_150 Hb_001396_150 Hb_005715_020--Hb_001396_150 Hb_032018_010 Hb_032018_010 Hb_000062_500--Hb_032018_010 Hb_005203_050 Hb_005203_050 Hb_000062_500--Hb_005203_050 Hb_003772_020 Hb_003772_020 Hb_000062_500--Hb_003772_020 Hb_007978_020 Hb_007978_020 Hb_000062_500--Hb_007978_020 Hb_000014_130 Hb_000014_130 Hb_000062_500--Hb_000014_130 Hb_167316_010 Hb_167316_010 Hb_000062_500--Hb_167316_010 Hb_007545_160--Hb_004410_060 Hb_007545_160--Hb_043950_010 Hb_007545_160--Hb_124976_010 Hb_007545_160--Hb_019859_030 Hb_007139_010 Hb_007139_010 Hb_007545_160--Hb_007139_010 Hb_012815_020 Hb_012815_020 Hb_007545_160--Hb_012815_020 Hb_043950_010--Hb_004410_060 Hb_043950_010--Hb_124976_010 Hb_043950_010--Hb_019859_030 Hb_043950_010--Hb_007139_010 Hb_043950_010--Hb_012815_020 Hb_000833_080 Hb_000833_080 Hb_173423_010--Hb_000833_080 Hb_000696_320 Hb_000696_320 Hb_173423_010--Hb_000696_320 Hb_173423_010--Hb_043950_010 Hb_173423_010--Hb_007545_160 Hb_173423_010--Hb_004410_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0510917 0.226576 0.0191818 0 0.0256405 0.597766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0186006 0

CAGE analysis