Hb_004650_120

Information

Type -
Description -
Location Contig4650: 103819-106591
Sequence    

Annotation

kegg
ID egr:104450480
description auxin transporter-like protein 3
nr
ID XP_012078180.1
description PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
swissprot
ID Q9FEL6
description Auxin transporter-like protein 3 OS=Medicago truncatula GN=LAX3 PE=2 SV=1
trembl
ID A0A067KKI1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12057 PE=4 SV=1
Gene Ontology
ID GO:0016021
description auxin transporter-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44035: 103745-106655
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004650_120 0.0 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
2 Hb_000009_280 0.061722968 - - Calmodulin, putative [Ricinus communis]
3 Hb_001511_220 0.0675440983 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
4 Hb_000676_230 0.0735241248 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
5 Hb_004032_290 0.0763352029 - - protein binding protein, putative [Ricinus communis]
6 Hb_001104_060 0.0766482593 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
7 Hb_007185_050 0.0775523969 - - hypothetical protein JCGZ_22475 [Jatropha curcas]
8 Hb_005711_030 0.0775688691 - - hypothetical protein RCOM_0460020 [Ricinus communis]
9 Hb_133974_010 0.0813694403 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
10 Hb_000077_250 0.0845284651 - - hypothetical protein JCGZ_25802 [Jatropha curcas]
11 Hb_000230_410 0.0853756904 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
12 Hb_004020_030 0.0870019108 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
13 Hb_020375_010 0.0873634352 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
14 Hb_135052_010 0.0902522035 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
15 Hb_000368_050 0.0942001252 - - beta-galactosidase, putative [Ricinus communis]
16 Hb_009522_010 0.0960357597 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
17 Hb_000813_070 0.0981000161 - - conserved hypothetical protein [Ricinus communis]
18 Hb_147006_010 0.0983991829 - - receptor like protein 35 [Arabidopsis thaliana]
19 Hb_009620_110 0.1008175997 - - -
20 Hb_000531_030 0.1010615653 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004650_120 Hb_004650_120 Hb_000009_280 Hb_000009_280 Hb_004650_120--Hb_000009_280 Hb_001511_220 Hb_001511_220 Hb_004650_120--Hb_001511_220 Hb_000676_230 Hb_000676_230 Hb_004650_120--Hb_000676_230 Hb_004032_290 Hb_004032_290 Hb_004650_120--Hb_004032_290 Hb_001104_060 Hb_001104_060 Hb_004650_120--Hb_001104_060 Hb_007185_050 Hb_007185_050 Hb_004650_120--Hb_007185_050 Hb_000230_410 Hb_000230_410 Hb_000009_280--Hb_000230_410 Hb_000009_280--Hb_007185_050 Hb_001136_040 Hb_001136_040 Hb_000009_280--Hb_001136_040 Hb_000009_280--Hb_004032_290 Hb_002874_200 Hb_002874_200 Hb_000009_280--Hb_002874_200 Hb_011224_070 Hb_011224_070 Hb_001511_220--Hb_011224_070 Hb_003747_160 Hb_003747_160 Hb_001511_220--Hb_003747_160 Hb_009476_080 Hb_009476_080 Hb_001511_220--Hb_009476_080 Hb_002835_360 Hb_002835_360 Hb_001511_220--Hb_002835_360 Hb_002499_030 Hb_002499_030 Hb_001511_220--Hb_002499_030 Hb_000676_230--Hb_004032_290 Hb_010142_060 Hb_010142_060 Hb_000676_230--Hb_010142_060 Hb_000368_050 Hb_000368_050 Hb_000676_230--Hb_000368_050 Hb_133974_010 Hb_133974_010 Hb_000676_230--Hb_133974_010 Hb_000364_090 Hb_000364_090 Hb_000676_230--Hb_000364_090 Hb_004032_290--Hb_002874_200 Hb_036520_030 Hb_036520_030 Hb_004032_290--Hb_036520_030 Hb_004032_290--Hb_007185_050 Hb_000395_310 Hb_000395_310 Hb_004032_290--Hb_000395_310 Hb_004032_290--Hb_000230_410 Hb_000531_030 Hb_000531_030 Hb_001104_060--Hb_000531_030 Hb_001104_060--Hb_011224_070 Hb_003376_060 Hb_003376_060 Hb_001104_060--Hb_003376_060 Hb_001456_030 Hb_001456_030 Hb_001104_060--Hb_001456_030 Hb_000699_220 Hb_000699_220 Hb_001104_060--Hb_000699_220 Hb_000227_360 Hb_000227_360 Hb_001104_060--Hb_000227_360 Hb_007185_050--Hb_001136_040 Hb_007185_050--Hb_002874_200 Hb_009783_010 Hb_009783_010 Hb_007185_050--Hb_009783_010 Hb_001898_040 Hb_001898_040 Hb_007185_050--Hb_001898_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0315229 8.96326 22.8685 103.179 0.0976304 0.0264545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.025187 0 1.83031 54.9081

CAGE analysis