Hb_004656_020

Information

Type -
Description -
Location Contig4656: 21768-24951
Sequence    

Annotation

kegg
ID smp:SMAC_04280
description hypothetical protein
nr
ID XP_011393016.1
description EF hand domain-containing protein, variant [Neurospora crassa OR74A]
swissprot
ID Q11002
description Calpain-A OS=Drosophila melanogaster GN=CalpA PE=1 SV=2
trembl
ID V5IRI8
description EF hand domain-containing protein, variant OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pef-1 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml49

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004656_020 0.0 - - EF hand domain-containing protein, variant [Neurospora crassa OR74A]
2 Hb_003253_060 0.0519611089 - - PREDICTED: tropinone reductase-like 1 [Vitis vinifera]
3 Hb_001376_040 0.0668177607 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
4 Hb_009083_080 0.0673323586 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000031_130 0.0788049805 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
6 Hb_032443_030 0.0874572373 - - PREDICTED: protein SRG1-like [Jatropha curcas]
7 Hb_001114_210 0.0892177971 - - PREDICTED: periaxin [Jatropha curcas]
8 Hb_006418_010 0.0955204368 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
9 Hb_005649_120 0.100704598 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
10 Hb_047690_010 0.1024092883 - - Phosphoprotein phosphatase [Theobroma cacao]
11 Hb_049562_010 0.1041093884 - - hypothetical protein JCGZ_25442 [Jatropha curcas]
12 Hb_135811_020 0.1079978125 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
13 Hb_001080_040 0.1080826421 - - cytochrome P450, putative [Ricinus communis]
14 Hb_002986_110 0.1110502306 - - PREDICTED: patatin-like protein 1 [Jatropha curcas]
15 Hb_002019_030 0.1110798719 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
16 Hb_181092_010 0.1121007782 - - unnamed protein product [Vitis vinifera]
17 Hb_000116_390 0.1124386965 - - Mlo protein [Hevea brasiliensis]
18 Hb_008616_020 0.1129839104 - - unnamed protein product [Vitis vinifera]
19 Hb_000185_060 0.1142852351 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
20 Hb_185340_010 0.1185094293 - - Rhicadhesin receptor precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004656_020 Hb_004656_020 Hb_003253_060 Hb_003253_060 Hb_004656_020--Hb_003253_060 Hb_001376_040 Hb_001376_040 Hb_004656_020--Hb_001376_040 Hb_009083_080 Hb_009083_080 Hb_004656_020--Hb_009083_080 Hb_000031_130 Hb_000031_130 Hb_004656_020--Hb_000031_130 Hb_032443_030 Hb_032443_030 Hb_004656_020--Hb_032443_030 Hb_001114_210 Hb_001114_210 Hb_004656_020--Hb_001114_210 Hb_047690_010 Hb_047690_010 Hb_003253_060--Hb_047690_010 Hb_003253_060--Hb_009083_080 Hb_001487_020 Hb_001487_020 Hb_003253_060--Hb_001487_020 Hb_135811_020 Hb_135811_020 Hb_003253_060--Hb_135811_020 Hb_150643_010 Hb_150643_010 Hb_003253_060--Hb_150643_010 Hb_001376_040--Hb_000031_130 Hb_008616_020 Hb_008616_020 Hb_001376_040--Hb_008616_020 Hb_001376_040--Hb_001114_210 Hb_001376_040--Hb_032443_030 Hb_005649_120 Hb_005649_120 Hb_001376_040--Hb_005649_120 Hb_006418_010 Hb_006418_010 Hb_009083_080--Hb_006418_010 Hb_181092_010 Hb_181092_010 Hb_009083_080--Hb_181092_010 Hb_000077_470 Hb_000077_470 Hb_009083_080--Hb_000077_470 Hb_000380_040 Hb_000380_040 Hb_009083_080--Hb_000380_040 Hb_000031_130--Hb_001114_210 Hb_000116_390 Hb_000116_390 Hb_000031_130--Hb_000116_390 Hb_000031_130--Hb_008616_020 Hb_000185_060 Hb_000185_060 Hb_000031_130--Hb_000185_060 Hb_002986_110 Hb_002986_110 Hb_032443_030--Hb_002986_110 Hb_008052_010 Hb_008052_010 Hb_032443_030--Hb_008052_010 Hb_002285_010 Hb_002285_010 Hb_032443_030--Hb_002285_010 Hb_000050_230 Hb_000050_230 Hb_032443_030--Hb_000050_230 Hb_000391_030 Hb_000391_030 Hb_032443_030--Hb_000391_030 Hb_004332_060 Hb_004332_060 Hb_032443_030--Hb_004332_060 Hb_049562_010 Hb_049562_010 Hb_001114_210--Hb_049562_010 Hb_001114_210--Hb_005649_120 Hb_001080_040 Hb_001080_040 Hb_001114_210--Hb_001080_040 Hb_008062_020 Hb_008062_020 Hb_001114_210--Hb_008062_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.746502 0 0.037528 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.56587 0

CAGE analysis