Hb_004656_030

Information

Type -
Description -
Location Contig4656: 46589-49010
Sequence    

Annotation

kegg
ID pop:POPTR_0015s14740g
description POPTRDRAFT_575664; putative pectin methylesterase family protein
nr
ID XP_002322401.1
description putative pectin methylesterase family protein [Populus trichocarpa]
swissprot
ID O22149
description Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2
trembl
ID B9ICT1
description Pectinesterase OS=Populus trichocarpa GN=POPTR_0015s14740g PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectinesterase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004656_030 0.0 - - putative pectin methylesterase family protein [Populus trichocarpa]
2 Hb_027913_010 0.0591239776 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_022630_010 0.0898901841 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
4 Hb_000656_360 0.0910984029 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
5 Hb_003847_140 0.0944075293 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
6 Hb_078477_010 0.0975356521 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
7 Hb_001749_020 0.0983965796 - - hypothetical protein CISIN_1g042220mg, partial [Citrus sinensis]
8 Hb_004161_010 0.0985642666 - - hypothetical protein JCGZ_21278 [Jatropha curcas]
9 Hb_001190_020 0.1028846159 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_001437_200 0.1088544072 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
11 Hb_000879_100 0.1172112189 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
12 Hb_005648_030 0.1222982022 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH18-like [Jatropha curcas]
13 Hb_029866_140 0.1244677403 - - PREDICTED: hevamine-A [Jatropha curcas]
14 Hb_133646_010 0.1247228325 - - hypothetical protein RCOM_1044030 [Ricinus communis]
15 Hb_006519_010 0.1249722869 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 [Vitis vinifera]
16 Hb_001403_070 0.126196058 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
17 Hb_048653_040 0.1270082789 - - ankyrin repeat family protein [Populus trichocarpa]
18 Hb_008707_020 0.12828712 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000369_150 0.1293747029 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20185 [Jatropha curcas]
20 Hb_119441_010 0.1304556935 - - hypothetical protein CISIN_1g0477971mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_004656_030 Hb_004656_030 Hb_027913_010 Hb_027913_010 Hb_004656_030--Hb_027913_010 Hb_022630_010 Hb_022630_010 Hb_004656_030--Hb_022630_010 Hb_000656_360 Hb_000656_360 Hb_004656_030--Hb_000656_360 Hb_003847_140 Hb_003847_140 Hb_004656_030--Hb_003847_140 Hb_078477_010 Hb_078477_010 Hb_004656_030--Hb_078477_010 Hb_001749_020 Hb_001749_020 Hb_004656_030--Hb_001749_020 Hb_001190_020 Hb_001190_020 Hb_027913_010--Hb_001190_020 Hb_027913_010--Hb_022630_010 Hb_027913_010--Hb_000656_360 Hb_001437_200 Hb_001437_200 Hb_027913_010--Hb_001437_200 Hb_027913_010--Hb_078477_010 Hb_022630_010--Hb_078477_010 Hb_005648_030 Hb_005648_030 Hb_022630_010--Hb_005648_030 Hb_002193_050 Hb_002193_050 Hb_022630_010--Hb_002193_050 Hb_001403_070 Hb_001403_070 Hb_022630_010--Hb_001403_070 Hb_000656_360--Hb_003847_140 Hb_029866_140 Hb_029866_140 Hb_000656_360--Hb_029866_140 Hb_176149_010 Hb_176149_010 Hb_000656_360--Hb_176149_010 Hb_066262_010 Hb_066262_010 Hb_000656_360--Hb_066262_010 Hb_119441_010 Hb_119441_010 Hb_000656_360--Hb_119441_010 Hb_000369_150 Hb_000369_150 Hb_000656_360--Hb_000369_150 Hb_003847_140--Hb_066262_010 Hb_008707_020 Hb_008707_020 Hb_003847_140--Hb_008707_020 Hb_005081_060 Hb_005081_060 Hb_003847_140--Hb_005081_060 Hb_011924_030 Hb_011924_030 Hb_003847_140--Hb_011924_030 Hb_003847_140--Hb_029866_140 Hb_078477_010--Hb_005648_030 Hb_000333_150 Hb_000333_150 Hb_078477_010--Hb_000333_150 Hb_001405_260 Hb_001405_260 Hb_078477_010--Hb_001405_260 Hb_044026_010 Hb_044026_010 Hb_078477_010--Hb_044026_010 Hb_001486_130 Hb_001486_130 Hb_001749_020--Hb_001486_130 Hb_001376_020 Hb_001376_020 Hb_001749_020--Hb_001376_020 Hb_001749_020--Hb_001403_070 Hb_001749_020--Hb_008707_020 Hb_001749_020--Hb_000656_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 9.19472 0.22966 0.631468 0 0.0130166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0297887 0 0 0.570325 0

CAGE analysis