Hb_004657_010

Information

Type -
Description -
Location Contig4657: 2606-5312
Sequence    

Annotation

kegg
ID pop:POPTR_0007s10610g
description POPTRDRAFT_1083067; hypothetical protein
nr
ID XP_012079303.1
description PREDICTED: uncharacterized protein LOC105639764 [Jatropha curcas]
swissprot
ID Q8T9S7
description Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN OS=Dictyostelium discoideum GN=pteN PE=2 SV=1
trembl
ID A0A067KJH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12450 PE=4 SV=1
Gene Ontology
ID GO:0016791
description phosphatidylinositol -trisphosphate 3-phosphatase and dual-specificity protein phosphatase pten-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004657_010 0.0 - - PREDICTED: uncharacterized protein LOC105639764 [Jatropha curcas]
2 Hb_006557_010 0.0780376388 - - -
3 Hb_004449_010 0.1229968118 - - lipase [Ricinus communis]
4 Hb_000329_620 0.1323081094 - - PREDICTED: uncharacterized protein LOC105643215 [Jatropha curcas]
5 Hb_000352_150 0.1348254137 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
6 Hb_005496_060 0.1365638469 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
7 Hb_002835_190 0.1560891291 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
8 Hb_043637_010 0.1566990436 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
9 Hb_002875_090 0.1575420567 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_170116_010 0.158248287 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
11 Hb_001252_160 0.1617142893 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]
12 Hb_000340_480 0.1642176263 - - -
13 Hb_000977_140 0.1666453541 - - PREDICTED: uncharacterized protein LOC105801335 [Gossypium raimondii]
14 Hb_001635_220 0.167156992 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
15 Hb_001980_020 0.1680403758 - - -
16 Hb_000603_200 0.1680634314 - - PREDICTED: myosin-15 [Jatropha curcas]
17 Hb_009662_030 0.1685783714 - - hypothetical protein JCGZ_15748 [Jatropha curcas]
18 Hb_178345_010 0.1688054338 - - hypothetical protein PHAVU_004G084200g [Phaseolus vulgaris]
19 Hb_002081_100 0.1703584112 - - -
20 Hb_000329_610 0.1704211841 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004657_010 Hb_004657_010 Hb_006557_010 Hb_006557_010 Hb_004657_010--Hb_006557_010 Hb_004449_010 Hb_004449_010 Hb_004657_010--Hb_004449_010 Hb_000329_620 Hb_000329_620 Hb_004657_010--Hb_000329_620 Hb_000352_150 Hb_000352_150 Hb_004657_010--Hb_000352_150 Hb_005496_060 Hb_005496_060 Hb_004657_010--Hb_005496_060 Hb_002835_190 Hb_002835_190 Hb_004657_010--Hb_002835_190 Hb_006557_010--Hb_005496_060 Hb_006557_010--Hb_000329_620 Hb_006557_010--Hb_004449_010 Hb_006557_010--Hb_002835_190 Hb_006557_010--Hb_000352_150 Hb_178345_010 Hb_178345_010 Hb_004449_010--Hb_178345_010 Hb_000340_480 Hb_000340_480 Hb_004449_010--Hb_000340_480 Hb_000977_140 Hb_000977_140 Hb_004449_010--Hb_000977_140 Hb_012395_100 Hb_012395_100 Hb_004449_010--Hb_012395_100 Hb_007158_030 Hb_007158_030 Hb_000329_620--Hb_007158_030 Hb_029464_010 Hb_029464_010 Hb_000329_620--Hb_029464_010 Hb_009193_130 Hb_009193_130 Hb_000329_620--Hb_009193_130 Hb_000329_620--Hb_002835_190 Hb_005271_030 Hb_005271_030 Hb_000329_620--Hb_005271_030 Hb_001252_160 Hb_001252_160 Hb_000329_620--Hb_001252_160 Hb_002875_090 Hb_002875_090 Hb_000352_150--Hb_002875_090 Hb_001980_020 Hb_001980_020 Hb_000352_150--Hb_001980_020 Hb_170116_010 Hb_170116_010 Hb_000352_150--Hb_170116_010 Hb_003636_090 Hb_003636_090 Hb_000352_150--Hb_003636_090 Hb_001454_390 Hb_001454_390 Hb_000352_150--Hb_001454_390 Hb_003253_010 Hb_003253_010 Hb_000352_150--Hb_003253_010 Hb_005496_060--Hb_002835_190 Hb_005496_060--Hb_000340_480 Hb_002374_340 Hb_002374_340 Hb_005496_060--Hb_002374_340 Hb_000753_260 Hb_000753_260 Hb_005496_060--Hb_000753_260 Hb_003913_100 Hb_003913_100 Hb_002835_190--Hb_003913_100 Hb_002835_190--Hb_001252_160 Hb_002942_030 Hb_002942_030 Hb_002835_190--Hb_002942_030 Hb_013479_020 Hb_013479_020 Hb_002835_190--Hb_013479_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.914692 0 0 0 0.984163 0.651037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.647596 0.424089 0.147337 0.0697605 0

CAGE analysis