Hb_004657_020

Information

Type -
Description -
Location Contig4657: 6537-8370
Sequence    

Annotation

kegg
ID rcu:RCOM_1152920
description rer1 protein, putative
nr
ID XP_002524914.1
description rer1 protein, putative [Ricinus communis]
swissprot
ID O48670
description Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=1 SV=1
trembl
ID B9SFZ5
description Rer1 protein, putative OS=Ricinus communis GN=RCOM_1152920 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein rer1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44042: 6687-9385
cDNA
(Sanger)
(ID:Location)		 012_D10.ab1: 6687-8947

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004657_020 0.0 - - rer1 protein, putative [Ricinus communis]
2 Hb_003052_100 0.0736858355 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_002078_450 0.0763352742 - - nuclear transport factor, putative [Ricinus communis]
4 Hb_000371_080 0.0788776836 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
5 Hb_009711_030 0.0796867513 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
6 Hb_001195_690 0.0814972048 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
7 Hb_005686_110 0.0816785535 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
8 Hb_024835_030 0.0879977754 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
9 Hb_034350_010 0.088035152 - - PREDICTED: TMV resistance protein N-like isoform X2 [Populus euphratica]
10 Hb_070986_010 0.0883986713 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
11 Hb_158092_070 0.0895888356 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
12 Hb_032717_080 0.0896766054 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
13 Hb_000613_140 0.0910241949 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
14 Hb_002030_040 0.0923221573 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
15 Hb_022250_040 0.092912381 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
16 Hb_001008_060 0.0952622612 - - PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Jatropha curcas]
17 Hb_003020_230 0.096156393 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
18 Hb_001221_410 0.0971961048 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
19 Hb_001824_070 0.0974776862 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
20 Hb_002105_090 0.0978483727 - - Rab4 [Hevea brasiliensis]

Gene co-expression network

sample Hb_004657_020 Hb_004657_020 Hb_003052_100 Hb_003052_100 Hb_004657_020--Hb_003052_100 Hb_002078_450 Hb_002078_450 Hb_004657_020--Hb_002078_450 Hb_000371_080 Hb_000371_080 Hb_004657_020--Hb_000371_080 Hb_009711_030 Hb_009711_030 Hb_004657_020--Hb_009711_030 Hb_001195_690 Hb_001195_690 Hb_004657_020--Hb_001195_690 Hb_005686_110 Hb_005686_110 Hb_004657_020--Hb_005686_110 Hb_158092_070 Hb_158092_070 Hb_003052_100--Hb_158092_070 Hb_003052_100--Hb_001195_690 Hb_003052_100--Hb_002078_450 Hb_071736_020 Hb_071736_020 Hb_003052_100--Hb_071736_020 Hb_001671_080 Hb_001671_080 Hb_003052_100--Hb_001671_080 Hb_002078_450--Hb_071736_020 Hb_002078_450--Hb_005686_110 Hb_000086_570 Hb_000086_570 Hb_002078_450--Hb_000086_570 Hb_002078_450--Hb_009711_030 Hb_001718_100 Hb_001718_100 Hb_002078_450--Hb_001718_100 Hb_022250_040 Hb_022250_040 Hb_002078_450--Hb_022250_040 Hb_000371_080--Hb_005686_110 Hb_000371_080--Hb_009711_030 Hb_000371_080--Hb_022250_040 Hb_003020_230 Hb_003020_230 Hb_000371_080--Hb_003020_230 Hb_001824_070 Hb_001824_070 Hb_000371_080--Hb_001824_070 Hb_005997_010 Hb_005997_010 Hb_000371_080--Hb_005997_010 Hb_009711_030--Hb_022250_040 Hb_125000_010 Hb_125000_010 Hb_009711_030--Hb_125000_010 Hb_001008_060 Hb_001008_060 Hb_009711_030--Hb_001008_060 Hb_009711_030--Hb_001824_070 Hb_002097_110 Hb_002097_110 Hb_009711_030--Hb_002097_110 Hb_004324_310 Hb_004324_310 Hb_001195_690--Hb_004324_310 Hb_003994_180 Hb_003994_180 Hb_001195_690--Hb_003994_180 Hb_001195_690--Hb_158092_070 Hb_021254_030 Hb_021254_030 Hb_001195_690--Hb_021254_030 Hb_005686_110--Hb_022250_040 Hb_001235_070 Hb_001235_070 Hb_005686_110--Hb_001235_070 Hb_001369_050 Hb_001369_050 Hb_005686_110--Hb_001369_050 Hb_005686_110--Hb_009711_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.5441 21.5049 10.5986 30.8615 38.0191 59.6414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
95.6287 80.1747 46.3745 29.3547 8.29591

CAGE analysis