Hb_004657_040

Information

Type transcription factor
Description TF Family: WRKY
Location Contig4657: 46547-48454
Sequence    

Annotation

kegg
ID pop:POPTR_0007s10670g
description POPTRDRAFT_655096; WRKY transcription factor 15 family protein
nr
ID XP_002310122.1
description WRKY transcription factor 15 family protein [Populus trichocarpa]
swissprot
ID Q9STX0
description Probable WRKY transcription factor 7 OS=Arabidopsis thaliana GN=WRKY7 PE=2 SV=1
trembl
ID B9HH88
description WRKY transcription factor 15 family protein OS=Populus trichocarpa GN=POPTR_0007s10670g PE=4 SV=1
Gene Ontology
ID GO:0003700
description wrky transcription factor 15 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44045: 46661-48434
cDNA
(Sanger)
(ID:Location)		 011_J17.ab1: 46687-47418 , 045_M19.ab1: 46684-47143 , 047_G18.ab1: 46684-47378

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004657_040 0.0 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
2 Hb_000181_160 0.0973653673 - - PREDICTED: uncharacterized protein LOC105637575 isoform X2 [Jatropha curcas]
3 Hb_000625_060 0.127067225 - - Protein P21, putative [Ricinus communis]
4 Hb_002686_390 0.1305540519 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
5 Hb_001408_050 0.1354983091 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001514_210 0.1392404285 - - hypothetical protein VITISV_012133 [Vitis vinifera]
7 Hb_009823_010 0.1429748322 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
8 Hb_001454_410 0.1463750317 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
9 Hb_000227_370 0.1464868804 - - sugar transporter, putative [Ricinus communis]
10 Hb_011200_020 0.1483353382 - - aldo-keto reductase, putative [Ricinus communis]
11 Hb_029584_090 0.1507925263 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
12 Hb_001221_480 0.1530059848 - - metal ion binding protein, putative [Ricinus communis]
13 Hb_031042_030 0.156142062 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]
14 Hb_032631_050 0.1581338324 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
15 Hb_003453_030 0.1607432672 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
16 Hb_004195_110 0.161588793 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
17 Hb_000029_370 0.163031724 - - multidrug resistance pump, putative [Ricinus communis]
18 Hb_000098_310 0.1632919913 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
19 Hb_001024_030 0.1650325545 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
20 Hb_000963_200 0.1652027122 - - beta-galactosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004657_040 Hb_004657_040 Hb_000181_160 Hb_000181_160 Hb_004657_040--Hb_000181_160 Hb_000625_060 Hb_000625_060 Hb_004657_040--Hb_000625_060 Hb_002686_390 Hb_002686_390 Hb_004657_040--Hb_002686_390 Hb_001408_050 Hb_001408_050 Hb_004657_040--Hb_001408_050 Hb_001514_210 Hb_001514_210 Hb_004657_040--Hb_001514_210 Hb_009823_010 Hb_009823_010 Hb_004657_040--Hb_009823_010 Hb_000181_160--Hb_001408_050 Hb_000181_160--Hb_009823_010 Hb_001454_410 Hb_001454_410 Hb_000181_160--Hb_001454_410 Hb_001221_480 Hb_001221_480 Hb_000181_160--Hb_001221_480 Hb_000098_310 Hb_000098_310 Hb_000181_160--Hb_000098_310 Hb_005186_090 Hb_005186_090 Hb_000625_060--Hb_005186_090 Hb_010578_050 Hb_010578_050 Hb_000625_060--Hb_010578_050 Hb_000625_060--Hb_001514_210 Hb_000030_260 Hb_000030_260 Hb_000625_060--Hb_000030_260 Hb_162286_030 Hb_162286_030 Hb_000625_060--Hb_162286_030 Hb_000010_200 Hb_000010_200 Hb_002686_390--Hb_000010_200 Hb_000254_040 Hb_000254_040 Hb_002686_390--Hb_000254_040 Hb_006711_020 Hb_006711_020 Hb_002686_390--Hb_006711_020 Hb_006949_030 Hb_006949_030 Hb_002686_390--Hb_006949_030 Hb_004884_200 Hb_004884_200 Hb_002686_390--Hb_004884_200 Hb_002686_390--Hb_001514_210 Hb_003453_030 Hb_003453_030 Hb_001408_050--Hb_003453_030 Hb_001408_050--Hb_009823_010 Hb_001678_030 Hb_001678_030 Hb_001408_050--Hb_001678_030 Hb_003576_050 Hb_003576_050 Hb_001408_050--Hb_003576_050 Hb_000638_090 Hb_000638_090 Hb_001408_050--Hb_000638_090 Hb_012753_200 Hb_012753_200 Hb_001514_210--Hb_012753_200 Hb_000085_230 Hb_000085_230 Hb_001514_210--Hb_000085_230 Hb_000579_180 Hb_000579_180 Hb_001514_210--Hb_000579_180 Hb_002805_150 Hb_002805_150 Hb_001514_210--Hb_002805_150 Hb_003031_030 Hb_003031_030 Hb_001514_210--Hb_003031_030 Hb_000976_440 Hb_000976_440 Hb_009823_010--Hb_000976_440 Hb_009823_010--Hb_003576_050 Hb_009823_010--Hb_000638_090 Hb_009823_010--Hb_000098_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.48092 63.6671 27.6036 24.1691 0.344668 1.94523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.24188 4.59547 3.8554 124.403 6.37233

CAGE analysis