Hb_004657_050

Information

Type -
Description -
Location Contig4657: 53701-56896
Sequence    

Annotation

kegg
ID rcu:RCOM_0550920
description tRNA-dihydrouridine synthase, putative
nr
ID XP_012079293.1
description PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
swissprot
ID Q8K582
description tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus norvegicus GN=Dus1l PE=2 SV=1
trembl
ID A0A067KAE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12444 PE=4 SV=1
Gene Ontology
ID GO:0017150
description trna-dihydrouridine(16 17) synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44046: 53760-56981
cDNA
(Sanger)
(ID:Location)		 005_D04.ab1: 53773-56009

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004657_050 0.0 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
2 Hb_023226_040 0.0634665826 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
3 Hb_028995_040 0.0642687227 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
4 Hb_011224_110 0.0646702563 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
5 Hb_002007_060 0.06491632 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
6 Hb_004931_090 0.069208228 - - PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]
7 Hb_000866_270 0.0732152716 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
8 Hb_000331_080 0.076202032 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
9 Hb_004934_110 0.0762656064 transcription factor TF Family: HMG hypothetical protein B456_002G115100 [Gossypium raimondii]
10 Hb_000840_030 0.0773220877 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
11 Hb_002301_140 0.0785468895 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
12 Hb_005539_350 0.079678631 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001269_680 0.0821817703 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
14 Hb_001552_020 0.0839210326 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
15 Hb_001235_190 0.0847036839 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
16 Hb_000023_230 0.0851189704 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
17 Hb_006198_110 0.0869632768 - - PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]
18 Hb_153112_020 0.0869982024 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
19 Hb_002928_130 0.0873249909 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
20 Hb_112798_030 0.0873471908 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004657_050 Hb_004657_050 Hb_023226_040 Hb_023226_040 Hb_004657_050--Hb_023226_040 Hb_028995_040 Hb_028995_040 Hb_004657_050--Hb_028995_040 Hb_011224_110 Hb_011224_110 Hb_004657_050--Hb_011224_110 Hb_002007_060 Hb_002007_060 Hb_004657_050--Hb_002007_060 Hb_004931_090 Hb_004931_090 Hb_004657_050--Hb_004931_090 Hb_000866_270 Hb_000866_270 Hb_004657_050--Hb_000866_270 Hb_023226_040--Hb_002007_060 Hb_023226_040--Hb_000866_270 Hb_000023_230 Hb_000023_230 Hb_023226_040--Hb_000023_230 Hb_000000_160 Hb_000000_160 Hb_023226_040--Hb_000000_160 Hb_023226_040--Hb_028995_040 Hb_001552_020 Hb_001552_020 Hb_028995_040--Hb_001552_020 Hb_028995_040--Hb_000866_270 Hb_004491_010 Hb_004491_010 Hb_028995_040--Hb_004491_010 Hb_003078_040 Hb_003078_040 Hb_028995_040--Hb_003078_040 Hb_002301_140 Hb_002301_140 Hb_028995_040--Hb_002301_140 Hb_153112_020 Hb_153112_020 Hb_011224_110--Hb_153112_020 Hb_002163_020 Hb_002163_020 Hb_011224_110--Hb_002163_020 Hb_001277_070 Hb_001277_070 Hb_011224_110--Hb_001277_070 Hb_000331_080 Hb_000331_080 Hb_011224_110--Hb_000331_080 Hb_005539_350 Hb_005539_350 Hb_011224_110--Hb_005539_350 Hb_002007_060--Hb_000866_270 Hb_001259_090 Hb_001259_090 Hb_002007_060--Hb_001259_090 Hb_001301_160 Hb_001301_160 Hb_002007_060--Hb_001301_160 Hb_002007_060--Hb_000000_160 Hb_002007_060--Hb_005539_350 Hb_000510_110 Hb_000510_110 Hb_004931_090--Hb_000510_110 Hb_165132_010 Hb_165132_010 Hb_004931_090--Hb_165132_010 Hb_004934_110 Hb_004934_110 Hb_004931_090--Hb_004934_110 Hb_002686_020 Hb_002686_020 Hb_004931_090--Hb_002686_020 Hb_001540_010 Hb_001540_010 Hb_004931_090--Hb_001540_010 Hb_000866_270--Hb_001259_090 Hb_001159_140 Hb_001159_140 Hb_000866_270--Hb_001159_140 Hb_000661_250 Hb_000661_250 Hb_000866_270--Hb_000661_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.6626 12.8106 11.4786 7.72574 17.8805 18.5473
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.1585 34.7036 24.706 8.28308 9.04629

CAGE analysis