Hb_004657_060

Information

Type -
Description -
Location Contig4657: 57022-61819
Sequence    

Annotation

kegg
ID rcu:RCOM_0550810
description Flavonol synthase/flavanone 3-hydroxylase, putative (EC:1.14.11.23)
nr
ID XP_002533264.1
description Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
swissprot
ID Q84MB6
description Probable 2-oxoglutarate-dependent dioxygenase At3g49630 OS=Arabidopsis thaliana GN=At3g50210 PE=2 SV=1
trembl
ID B9T4U5
description Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis GN=RCOM_0550810 PE=3 SV=1
Gene Ontology
ID GO:0005506
description probable 2-oxoglutarate-dependent dioxygenase at3g49630

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44047: 57032-61854 , PASA_asmbl_44048: 57032-61854 , PASA_asmbl_44049: 57032-61872 , PASA_asmbl_44050: 57126-61872 , PASA_asmbl_44052: 58083-58534 , PASA_asmbl_44053: 62182-63490
cDNA
(Sanger)
(ID:Location)		 008_A10.ab1: 59513-61872

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004657_060 0.0 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
2 Hb_074506_010 0.1168241445 - - JHL25H03.10 [Jatropha curcas]
3 Hb_152868_030 0.1678650893 - - abhydrolase domain containing, putative [Ricinus communis]
4 Hb_006700_040 0.1761217982 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
5 Hb_027760_090 0.180089833 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
6 Hb_012760_110 0.1807850066 - - PREDICTED: methyltransferase-like protein 23 isoform X1 [Jatropha curcas]
7 Hb_002291_020 0.1812629155 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
8 Hb_012565_040 0.1850736975 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
9 Hb_101449_010 0.189074316 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
10 Hb_011872_020 0.194578442 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH128 [Jatropha curcas]
11 Hb_000735_070 0.1955282295 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
12 Hb_000853_060 0.1956226679 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
13 Hb_000227_330 0.2000598671 - - Acyl-CoA synthetase [Ricinus communis]
14 Hb_011853_010 0.2005640797 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
15 Hb_002170_020 0.202101752 transcription factor TF Family: MYB MYB transcription factor [Hevea brasiliensis]
16 Hb_000453_240 0.2056814844 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
17 Hb_000215_360 0.2068658199 - - Uncharacterized protein isoform 2 [Theobroma cacao]
18 Hb_000094_370 0.2100537108 - - -
19 Hb_000811_010 0.2104197258 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF118 [Jatropha curcas]
20 Hb_000340_290 0.2110584359 - - PREDICTED: piezo-type mechanosensitive ion channel homolog [Jatropha curcas]

Gene co-expression network

sample Hb_004657_060 Hb_004657_060 Hb_074506_010 Hb_074506_010 Hb_004657_060--Hb_074506_010 Hb_152868_030 Hb_152868_030 Hb_004657_060--Hb_152868_030 Hb_006700_040 Hb_006700_040 Hb_004657_060--Hb_006700_040 Hb_027760_090 Hb_027760_090 Hb_004657_060--Hb_027760_090 Hb_012760_110 Hb_012760_110 Hb_004657_060--Hb_012760_110 Hb_002291_020 Hb_002291_020 Hb_004657_060--Hb_002291_020 Hb_000853_060 Hb_000853_060 Hb_074506_010--Hb_000853_060 Hb_000453_240 Hb_000453_240 Hb_074506_010--Hb_000453_240 Hb_074506_010--Hb_152868_030 Hb_011633_040 Hb_011633_040 Hb_074506_010--Hb_011633_040 Hb_101449_010 Hb_101449_010 Hb_074506_010--Hb_101449_010 Hb_027380_190 Hb_027380_190 Hb_152868_030--Hb_027380_190 Hb_005015_110 Hb_005015_110 Hb_152868_030--Hb_005015_110 Hb_002170_020 Hb_002170_020 Hb_152868_030--Hb_002170_020 Hb_003025_030 Hb_003025_030 Hb_152868_030--Hb_003025_030 Hb_000465_150 Hb_000465_150 Hb_152868_030--Hb_000465_150 Hb_152868_030--Hb_011633_040 Hb_011853_010 Hb_011853_010 Hb_006700_040--Hb_011853_010 Hb_001040_150 Hb_001040_150 Hb_006700_040--Hb_001040_150 Hb_033594_100 Hb_033594_100 Hb_006700_040--Hb_033594_100 Hb_126398_020 Hb_126398_020 Hb_006700_040--Hb_126398_020 Hb_006700_040--Hb_152868_030 Hb_000656_200 Hb_000656_200 Hb_006700_040--Hb_000656_200 Hb_027760_090--Hb_012760_110 Hb_007919_040 Hb_007919_040 Hb_027760_090--Hb_007919_040 Hb_007472_080 Hb_007472_080 Hb_027760_090--Hb_007472_080 Hb_000811_010 Hb_000811_010 Hb_027760_090--Hb_000811_010 Hb_027760_090--Hb_074506_010 Hb_000215_360 Hb_000215_360 Hb_012760_110--Hb_000215_360 Hb_000001_130 Hb_000001_130 Hb_012760_110--Hb_000001_130 Hb_003185_100 Hb_003185_100 Hb_012760_110--Hb_003185_100 Hb_000204_070 Hb_000204_070 Hb_012760_110--Hb_000204_070 Hb_073171_100 Hb_073171_100 Hb_012760_110--Hb_073171_100 Hb_001691_200 Hb_001691_200 Hb_012760_110--Hb_001691_200 Hb_000649_180 Hb_000649_180 Hb_002291_020--Hb_000649_180 Hb_002291_020--Hb_007919_040 Hb_000141_010 Hb_000141_010 Hb_002291_020--Hb_000141_010 Hb_149515_010 Hb_149515_010 Hb_002291_020--Hb_149515_010 Hb_012565_040 Hb_012565_040 Hb_002291_020--Hb_012565_040 Hb_000527_070 Hb_000527_070 Hb_002291_020--Hb_000527_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.54032 16.7068 3.61574 11.5638 1.11914 0.665392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.26956 11.3787 5.96061 32.1811 22.4056

CAGE analysis