Hb_004659_020

Information

Type -
Description -
Location Contig4659: 14991-24845
Sequence    

Annotation

kegg
ID rcu:RCOM_1674930
description coatomer gamma subunit, putative
nr
ID XP_012069877.1
description PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
swissprot
ID Q6Z382
description Coatomer subunit gamma-2 OS=Oryza sativa subsp. japonica GN=Os07g0201100 PE=2 SV=1
trembl
ID A0A067LP51
description Coatomer subunit gamma OS=Jatropha curcas GN=JCGZ_10084 PE=3 SV=1
Gene Ontology
ID GO:0005829
description coatomer subunit gamma-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44069: 14986-24106
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004659_020 0.0 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
2 Hb_000004_030 0.075814534 - - PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]
3 Hb_009529_030 0.0801369659 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
4 Hb_017295_010 0.0840692577 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
5 Hb_002785_050 0.0860025307 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
6 Hb_002248_110 0.0866622497 - - hypothetical protein POPTR_0001s41050g [Populus trichocarpa]
7 Hb_002273_120 0.0872442996 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
8 Hb_000345_360 0.0877950854 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
9 Hb_000208_260 0.0896797273 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
10 Hb_000990_090 0.0898969324 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
11 Hb_002391_290 0.0917169685 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
12 Hb_000264_350 0.0924437934 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
13 Hb_003671_010 0.0930038145 - - PREDICTED: protein transport protein SFT2 isoform X1 [Jatropha curcas]
14 Hb_000960_040 0.0930470152 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
15 Hb_008103_040 0.0931181839 - - diacylglycerol O-acyltransferase 1 [Jatropha curcas]
16 Hb_004223_290 0.0941592254 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
17 Hb_012053_080 0.0953322403 - - AP-2 complex subunit alpha, putative [Ricinus communis]
18 Hb_005147_060 0.0981400792 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
19 Hb_009049_020 0.1012711003 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
20 Hb_000362_150 0.1013552787 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_004659_020 Hb_004659_020 Hb_000004_030 Hb_000004_030 Hb_004659_020--Hb_000004_030 Hb_009529_030 Hb_009529_030 Hb_004659_020--Hb_009529_030 Hb_017295_010 Hb_017295_010 Hb_004659_020--Hb_017295_010 Hb_002785_050 Hb_002785_050 Hb_004659_020--Hb_002785_050 Hb_002248_110 Hb_002248_110 Hb_004659_020--Hb_002248_110 Hb_002273_120 Hb_002273_120 Hb_004659_020--Hb_002273_120 Hb_000264_350 Hb_000264_350 Hb_000004_030--Hb_000264_350 Hb_000960_040 Hb_000960_040 Hb_000004_030--Hb_000960_040 Hb_041828_010 Hb_041828_010 Hb_000004_030--Hb_041828_010 Hb_002391_290 Hb_002391_290 Hb_000004_030--Hb_002391_290 Hb_001862_140 Hb_001862_140 Hb_000004_030--Hb_001862_140 Hb_009529_030--Hb_002273_120 Hb_009529_030--Hb_017295_010 Hb_000362_150 Hb_000362_150 Hb_009529_030--Hb_000362_150 Hb_009529_030--Hb_002785_050 Hb_032050_040 Hb_032050_040 Hb_009529_030--Hb_032050_040 Hb_000345_360 Hb_000345_360 Hb_009529_030--Hb_000345_360 Hb_000107_210 Hb_000107_210 Hb_017295_010--Hb_000107_210 Hb_005227_010 Hb_005227_010 Hb_017295_010--Hb_005227_010 Hb_000008_270 Hb_000008_270 Hb_017295_010--Hb_000008_270 Hb_017295_010--Hb_002273_120 Hb_001109_060 Hb_001109_060 Hb_017295_010--Hb_001109_060 Hb_002785_050--Hb_002273_120 Hb_002785_050--Hb_032050_040 Hb_000830_030 Hb_000830_030 Hb_002785_050--Hb_000830_030 Hb_001882_050 Hb_001882_050 Hb_002785_050--Hb_001882_050 Hb_000260_330 Hb_000260_330 Hb_002785_050--Hb_000260_330 Hb_058999_030 Hb_058999_030 Hb_002248_110--Hb_058999_030 Hb_000208_260 Hb_000208_260 Hb_002248_110--Hb_000208_260 Hb_001269_230 Hb_001269_230 Hb_002248_110--Hb_001269_230 Hb_017700_010 Hb_017700_010 Hb_002248_110--Hb_017700_010 Hb_001188_060 Hb_001188_060 Hb_002248_110--Hb_001188_060 Hb_003010_020 Hb_003010_020 Hb_002273_120--Hb_003010_020 Hb_002273_120--Hb_032050_040 Hb_003375_070 Hb_003375_070 Hb_002273_120--Hb_003375_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.2482 17.0991 29.844 50.1688 49.3125 55.6675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.6525 12.6629 23.7012 36.6497 32.7603

CAGE analysis