Hb_004659_060

Information

Type -
Description -
Location Contig4659: 41027-44198
Sequence    

Annotation

kegg
ID pop:POPTR_0009s11790g
description POPTRDRAFT_722063; RAS-related GTP-binding family protein
nr
ID XP_002313053.1
description RAS-related GTP-binding family protein [Populus trichocarpa]
swissprot
ID P31022
description Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=1
trembl
ID A9PE06
description RAS-related GTP-binding family protein OS=Populus trichocarpa GN=POPTR_0009s11790g PE=2 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rab7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44070: 40779-44511 , PASA_asmbl_44071: 40779-44511
cDNA
(Sanger)
(ID:Location)		 012_P23.ab1: 40856-44167 , 016_M08.ab1: 40841-43487 , 052_I24.ab1: 40841-44173

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004659_060 0.0 - - RAS-related GTP-binding family protein [Populus trichocarpa]
2 Hb_001008_090 0.0770520222 - - cytochrome C oxidase, putative [Ricinus communis]
3 Hb_000417_260 0.082373939 - - protein with unknown function [Ricinus communis]
4 Hb_000122_020 0.0848618526 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]
5 Hb_114310_080 0.0880817704 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004449_200 0.0910361207 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
7 Hb_012490_050 0.0921482381 - - PREDICTED: uncharacterized protein LOC105637921 [Jatropha curcas]
8 Hb_001005_080 0.093708256 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
9 Hb_002631_020 0.0957017719 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
10 Hb_005463_140 0.0960224705 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
11 Hb_000322_140 0.096197221 - - hypothetical protein RCOM_1047200 [Ricinus communis]
12 Hb_001461_010 0.0969125681 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
13 Hb_003018_050 0.0972655349 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
14 Hb_000300_220 0.0975463249 - - PREDICTED: uncharacterized protein LOC105632569 [Jatropha curcas]
15 Hb_001284_030 0.097964442 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
16 Hb_124755_010 0.1001373698 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
17 Hb_005278_040 0.1003611154 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
18 Hb_011644_030 0.1015305456 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
19 Hb_001307_090 0.101560903 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
20 Hb_000224_120 0.1027520776 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]

Gene co-expression network

sample Hb_004659_060 Hb_004659_060 Hb_001008_090 Hb_001008_090 Hb_004659_060--Hb_001008_090 Hb_000417_260 Hb_000417_260 Hb_004659_060--Hb_000417_260 Hb_000122_020 Hb_000122_020 Hb_004659_060--Hb_000122_020 Hb_114310_080 Hb_114310_080 Hb_004659_060--Hb_114310_080 Hb_004449_200 Hb_004449_200 Hb_004659_060--Hb_004449_200 Hb_012490_050 Hb_012490_050 Hb_004659_060--Hb_012490_050 Hb_005278_040 Hb_005278_040 Hb_001008_090--Hb_005278_040 Hb_001008_090--Hb_000417_260 Hb_006569_100 Hb_006569_100 Hb_001008_090--Hb_006569_100 Hb_000300_220 Hb_000300_220 Hb_001008_090--Hb_000300_220 Hb_183961_010 Hb_183961_010 Hb_001008_090--Hb_183961_010 Hb_000417_260--Hb_005278_040 Hb_001005_080 Hb_001005_080 Hb_000417_260--Hb_001005_080 Hb_000384_120 Hb_000384_120 Hb_000417_260--Hb_000384_120 Hb_004672_010 Hb_004672_010 Hb_000417_260--Hb_004672_010 Hb_001481_140 Hb_001481_140 Hb_000417_260--Hb_001481_140 Hb_000122_020--Hb_004449_200 Hb_002631_020 Hb_002631_020 Hb_000122_020--Hb_002631_020 Hb_001307_090 Hb_001307_090 Hb_000122_020--Hb_001307_090 Hb_003018_050 Hb_003018_050 Hb_000122_020--Hb_003018_050 Hb_001461_010 Hb_001461_010 Hb_000122_020--Hb_001461_010 Hb_000985_060 Hb_000985_060 Hb_114310_080--Hb_000985_060 Hb_028515_010 Hb_028515_010 Hb_114310_080--Hb_028515_010 Hb_029388_030 Hb_029388_030 Hb_114310_080--Hb_029388_030 Hb_000483_390 Hb_000483_390 Hb_114310_080--Hb_000483_390 Hb_114310_080--Hb_000417_260 Hb_114310_080--Hb_001461_010 Hb_004449_200--Hb_002631_020 Hb_007926_060 Hb_007926_060 Hb_004449_200--Hb_007926_060 Hb_001191_090 Hb_001191_090 Hb_004449_200--Hb_001191_090 Hb_000364_030 Hb_000364_030 Hb_004449_200--Hb_000364_030 Hb_004449_200--Hb_001461_010 Hb_000834_030 Hb_000834_030 Hb_012490_050--Hb_000834_030 Hb_005463_140 Hb_005463_140 Hb_012490_050--Hb_005463_140 Hb_011644_030 Hb_011644_030 Hb_012490_050--Hb_011644_030 Hb_000707_020 Hb_000707_020 Hb_012490_050--Hb_000707_020 Hb_000817_030 Hb_000817_030 Hb_012490_050--Hb_000817_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.2586 22.8559 28.4695 126.589 30.3389 98.5454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
167.441 239.205 176.341 75.6532 50.2421

CAGE analysis