Hb_004659_070

Information

Type -
Description -
Location Contig4659: 46486-47034
Sequence    

Annotation

kegg
ID vvi:100853060
description organ-specific protein P4-like
nr
ID XP_003631642.1
description PREDICTED: organ-specific protein P4-like [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5AWY4
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004659_070 0.0 - - PREDICTED: organ-specific protein P4-like [Vitis vinifera]
2 Hb_002903_120 0.1603524694 - - -
3 Hb_000976_180 0.1761720642 - - PREDICTED: uncharacterized protein LOC102592049 [Solanum tuberosum]
4 Hb_010368_070 0.1768761568 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000525_040 0.1815331506 - - -
6 Hb_000173_210 0.1821869511 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
7 Hb_000987_050 0.1890521123 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
8 Hb_000317_080 0.1911135719 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
9 Hb_000018_160 0.1972057851 - - nitrate transporter, putative [Ricinus communis]
10 Hb_001268_230 0.2014412907 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
11 Hb_001146_070 0.2048454992 transcription factor TF Family: bHLH LMYC2 [Hevea brasiliensis]
12 Hb_045502_010 0.2071721645 - - prefoldin subunit 1 [Jatropha curcas]
13 Hb_053543_010 0.2084256987 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000318_260 0.2088352419 - - PREDICTED: cell division cycle-associated 7-like protein [Jatropha curcas]
15 Hb_000140_150 0.2090003039 - - -
16 Hb_000544_120 0.2107546499 - - PREDICTED: thymidylate kinase [Jatropha curcas]
17 Hb_003320_030 0.2127810548 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002728_020 0.2145523091 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105649143 isoform X1 [Jatropha curcas]
19 Hb_000853_300 0.215657761 - - -
20 Hb_000619_070 0.216816514 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]

Gene co-expression network

sample Hb_004659_070 Hb_004659_070 Hb_002903_120 Hb_002903_120 Hb_004659_070--Hb_002903_120 Hb_000976_180 Hb_000976_180 Hb_004659_070--Hb_000976_180 Hb_010368_070 Hb_010368_070 Hb_004659_070--Hb_010368_070 Hb_000525_040 Hb_000525_040 Hb_004659_070--Hb_000525_040 Hb_000173_210 Hb_000173_210 Hb_004659_070--Hb_000173_210 Hb_000987_050 Hb_000987_050 Hb_004659_070--Hb_000987_050 Hb_002903_120--Hb_010368_070 Hb_002903_120--Hb_000173_210 Hb_002897_040 Hb_002897_040 Hb_002903_120--Hb_002897_040 Hb_002903_120--Hb_000525_040 Hb_045502_010 Hb_045502_010 Hb_002903_120--Hb_045502_010 Hb_000544_120 Hb_000544_120 Hb_002903_120--Hb_000544_120 Hb_000318_260 Hb_000318_260 Hb_000976_180--Hb_000318_260 Hb_000976_180--Hb_000987_050 Hb_000317_080 Hb_000317_080 Hb_000976_180--Hb_000317_080 Hb_011515_030 Hb_011515_030 Hb_000976_180--Hb_011515_030 Hb_053543_010 Hb_053543_010 Hb_000976_180--Hb_053543_010 Hb_010368_070--Hb_000525_040 Hb_004032_460 Hb_004032_460 Hb_010368_070--Hb_004032_460 Hb_001628_110 Hb_001628_110 Hb_010368_070--Hb_001628_110 Hb_002172_030 Hb_002172_030 Hb_010368_070--Hb_002172_030 Hb_000050_120 Hb_000050_120 Hb_010368_070--Hb_000050_120 Hb_000525_040--Hb_004032_460 Hb_019936_010 Hb_019936_010 Hb_000525_040--Hb_019936_010 Hb_007634_020 Hb_007634_020 Hb_000525_040--Hb_007634_020 Hb_011616_030 Hb_011616_030 Hb_000525_040--Hb_011616_030 Hb_000392_280 Hb_000392_280 Hb_000173_210--Hb_000392_280 Hb_000173_370 Hb_000173_370 Hb_000173_210--Hb_000173_370 Hb_000173_210--Hb_002897_040 Hb_000619_070 Hb_000619_070 Hb_000173_210--Hb_000619_070 Hb_006631_010 Hb_006631_010 Hb_000173_210--Hb_006631_010 Hb_035360_010 Hb_035360_010 Hb_000173_210--Hb_035360_010 Hb_000987_050--Hb_053543_010 Hb_000987_050--Hb_000317_080 Hb_010931_110 Hb_010931_110 Hb_000987_050--Hb_010931_110 Hb_130177_010 Hb_130177_010 Hb_000987_050--Hb_130177_010 Hb_043959_010 Hb_043959_010 Hb_000987_050--Hb_043959_010 Hb_098315_110 Hb_098315_110 Hb_000987_050--Hb_098315_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.87579 0.839127 0.64237 0 9.53923 3.56796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.64525 0.868246 0.568608 0 0

CAGE analysis