Hb_004659_100

Information

Type -
Description -
Location Contig4659: 65699-66514
Sequence    

Annotation

kegg
ID rcu:RCOM_0937130
description hypothetical protein
nr
ID XP_002519075.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZA6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0937130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44075: 65792-66476
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004659_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_033053_020 0.0718166995 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
3 Hb_009627_020 0.0895690336 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
4 Hb_002897_030 0.0935563506 - - PREDICTED: methylesterase 17 [Jatropha curcas]
5 Hb_024868_010 0.0975379488 - - protein kinase, putative [Ricinus communis]
6 Hb_002325_050 0.0978916673 transcription factor TF Family: MYB MYB transcriptional factor [Populus nigra]
7 Hb_009838_120 0.0983888534 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
8 Hb_000631_100 0.1024223845 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
9 Hb_008021_040 0.1033978947 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
10 Hb_001198_180 0.1042571625 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
11 Hb_002888_100 0.1058125029 - - PREDICTED: uncharacterized protein LOC103699074, partial [Phoenix dactylifera]
12 Hb_043789_010 0.1066882694 transcription factor TF Family: AP2 hypothetical protein VITISV_034131 [Vitis vinifera]
13 Hb_005679_120 0.1092827807 - - hypothetical protein RCOM_0284080 [Ricinus communis]
14 Hb_001048_070 0.110616573 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
15 Hb_004631_100 0.1108981889 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
16 Hb_001562_030 0.1109498387 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
17 Hb_008725_020 0.1146309573 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
18 Hb_000571_060 0.1171473863 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
19 Hb_002811_110 0.1182653636 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
20 Hb_038718_010 0.1203084528 - - Disease resistance protein RFL1, putative [Ricinus communis]

Gene co-expression network

sample Hb_004659_100 Hb_004659_100 Hb_033053_020 Hb_033053_020 Hb_004659_100--Hb_033053_020 Hb_009627_020 Hb_009627_020 Hb_004659_100--Hb_009627_020 Hb_002897_030 Hb_002897_030 Hb_004659_100--Hb_002897_030 Hb_024868_010 Hb_024868_010 Hb_004659_100--Hb_024868_010 Hb_002325_050 Hb_002325_050 Hb_004659_100--Hb_002325_050 Hb_009838_120 Hb_009838_120 Hb_004659_100--Hb_009838_120 Hb_087427_010 Hb_087427_010 Hb_033053_020--Hb_087427_010 Hb_004631_100 Hb_004631_100 Hb_033053_020--Hb_004631_100 Hb_000631_100 Hb_000631_100 Hb_033053_020--Hb_000631_100 Hb_038718_010 Hb_038718_010 Hb_033053_020--Hb_038718_010 Hb_008021_040 Hb_008021_040 Hb_033053_020--Hb_008021_040 Hb_009627_020--Hb_009838_120 Hb_000479_230 Hb_000479_230 Hb_009627_020--Hb_000479_230 Hb_009627_020--Hb_024868_010 Hb_005679_120 Hb_005679_120 Hb_009627_020--Hb_005679_120 Hb_009627_020--Hb_000631_100 Hb_011355_020 Hb_011355_020 Hb_002897_030--Hb_011355_020 Hb_001198_180 Hb_001198_180 Hb_002897_030--Hb_001198_180 Hb_004031_050 Hb_004031_050 Hb_002897_030--Hb_004031_050 Hb_006026_020 Hb_006026_020 Hb_002897_030--Hb_006026_020 Hb_005214_050 Hb_005214_050 Hb_002897_030--Hb_005214_050 Hb_024868_010--Hb_009838_120 Hb_001645_030 Hb_001645_030 Hb_024868_010--Hb_001645_030 Hb_189208_050 Hb_189208_050 Hb_024868_010--Hb_189208_050 Hb_024868_010--Hb_000631_100 Hb_003216_140 Hb_003216_140 Hb_024868_010--Hb_003216_140 Hb_008725_020 Hb_008725_020 Hb_002325_050--Hb_008725_020 Hb_189034_010 Hb_189034_010 Hb_002325_050--Hb_189034_010 Hb_002325_050--Hb_001198_180 Hb_010642_010 Hb_010642_010 Hb_002325_050--Hb_010642_010 Hb_001562_030 Hb_001562_030 Hb_002325_050--Hb_001562_030 Hb_009838_120--Hb_008021_040 Hb_009838_120--Hb_005679_120 Hb_139461_010 Hb_139461_010 Hb_009838_120--Hb_139461_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.385234 20.5341 16.6188 42.3094 0.208575 0.261245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0846056 0 0 15.3654 4.71621

CAGE analysis