Hb_004662_010

Information

Type -
Description -
Location Contig4662: 11308-12074
Sequence    

Annotation

kegg
ID mtr:MTR_3g020520
description Nascent polypeptide-associated complex subunit beta
nr
ID XP_003598754.1
description Nascent polypeptide-associated complex subunit beta [Medicago truncatula]
swissprot
ID Q02642
description Nascent polypeptide-associated complex subunit beta-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EGD1 PE=1 SV=2
trembl
ID G7IW62
description Nascent polypeptide-associated complex subunit beta OS=Medicago truncatula GN=MTR_3g020520 PE=3 SV=1
Gene Ontology
ID GO:0005524
description transcription factor btf3 homolog 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44094: 11085-28601 , PASA_asmbl_44095: 11396-12626
cDNA
(Sanger)
(ID:Location)		 020_N13.ab1: 11140-28601 , 022_P11.ab1: 11122-28553 , 035_B12.ab1: 11158-28571

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004662_010 0.0 - - Nascent polypeptide-associated complex subunit beta [Medicago truncatula]
2 Hb_181320_010 0.1326776449 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
3 Hb_004241_040 0.1447824783 - - -
4 Hb_144898_010 0.1486032719 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
5 Hb_012305_040 0.1507369888 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A-like [Jatropha curcas]
6 Hb_175612_010 0.1510785054 transcription factor TF Family: MBF1 orf [Ricinus communis]
7 Hb_005217_020 0.1624383804 - - PREDICTED: ribosomal RNA processing protein 36 homolog isoform X2 [Jatropha curcas]
8 Hb_176117_010 0.1634344609 - - Cold-inducible RNA-binding protein [Morus notabilis]
9 Hb_002141_020 0.1654161152 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
10 Hb_003849_080 0.1656649888 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_000107_140 0.1664271248 - - -
12 Hb_000732_020 0.1664362484 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
13 Hb_003995_010 0.1672440337 - - -
14 Hb_023327_030 0.1705943209 - - osmotin-like protein [Hevea brasiliensis]
15 Hb_007534_040 0.1760094091 - - PREDICTED: uncharacterized protein LOC105635538 [Jatropha curcas]
16 Hb_001523_010 0.1789342058 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_25496 [Jatropha curcas]
17 Hb_001565_100 0.1790517053 - - unnamed protein product [Coffea canephora]
18 Hb_000056_230 0.1797703682 transcription factor TF Family: TCP hypothetical protein JCGZ_15588 [Jatropha curcas]
19 Hb_000331_500 0.179924686 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
20 Hb_002475_050 0.1810331707 - - hypothetical protein JCGZ_22540 [Jatropha curcas]

Gene co-expression network

sample Hb_004662_010 Hb_004662_010 Hb_181320_010 Hb_181320_010 Hb_004662_010--Hb_181320_010 Hb_004241_040 Hb_004241_040 Hb_004662_010--Hb_004241_040 Hb_144898_010 Hb_144898_010 Hb_004662_010--Hb_144898_010 Hb_012305_040 Hb_012305_040 Hb_004662_010--Hb_012305_040 Hb_175612_010 Hb_175612_010 Hb_004662_010--Hb_175612_010 Hb_005217_020 Hb_005217_020 Hb_004662_010--Hb_005217_020 Hb_176117_010 Hb_176117_010 Hb_181320_010--Hb_176117_010 Hb_181320_010--Hb_144898_010 Hb_005016_150 Hb_005016_150 Hb_181320_010--Hb_005016_150 Hb_000891_040 Hb_000891_040 Hb_181320_010--Hb_000891_040 Hb_000270_500 Hb_000270_500 Hb_181320_010--Hb_000270_500 Hb_032496_030 Hb_032496_030 Hb_004241_040--Hb_032496_030 Hb_073367_010 Hb_073367_010 Hb_004241_040--Hb_073367_010 Hb_000622_100 Hb_000622_100 Hb_004241_040--Hb_000622_100 Hb_025236_040 Hb_025236_040 Hb_004241_040--Hb_025236_040 Hb_005054_070 Hb_005054_070 Hb_004241_040--Hb_005054_070 Hb_000107_140 Hb_000107_140 Hb_144898_010--Hb_000107_140 Hb_005305_060 Hb_005305_060 Hb_144898_010--Hb_005305_060 Hb_001722_020 Hb_001722_020 Hb_144898_010--Hb_001722_020 Hb_144898_010--Hb_005054_070 Hb_012807_080 Hb_012807_080 Hb_144898_010--Hb_012807_080 Hb_000176_120 Hb_000176_120 Hb_012305_040--Hb_000176_120 Hb_012305_040--Hb_000107_140 Hb_073339_010 Hb_073339_010 Hb_012305_040--Hb_073339_010 Hb_012305_040--Hb_144898_010 Hb_012305_040--Hb_004241_040 Hb_007534_040 Hb_007534_040 Hb_175612_010--Hb_007534_040 Hb_000617_220 Hb_000617_220 Hb_175612_010--Hb_000617_220 Hb_000175_390 Hb_000175_390 Hb_175612_010--Hb_000175_390 Hb_000236_300 Hb_000236_300 Hb_175612_010--Hb_000236_300 Hb_004447_030 Hb_004447_030 Hb_175612_010--Hb_004447_030 Hb_000156_140 Hb_000156_140 Hb_175612_010--Hb_000156_140 Hb_000264_060 Hb_000264_060 Hb_005217_020--Hb_000264_060 Hb_002837_070 Hb_002837_070 Hb_005217_020--Hb_002837_070 Hb_000270_450 Hb_000270_450 Hb_005217_020--Hb_000270_450 Hb_001523_010 Hb_001523_010 Hb_005217_020--Hb_001523_010 Hb_000172_530 Hb_000172_530 Hb_005217_020--Hb_000172_530 Hb_009615_110 Hb_009615_110 Hb_005217_020--Hb_009615_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2628.9 478.302 291.338 1029.25 2012.93 3986.37
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
944.39 1132.5 161.205 214.828 24.2712

CAGE analysis