Hb_004662_030

Information

Type -
Description -
Location Contig4662: 18626-28401
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa012487mg
description hypothetical protein
nr
ID XP_007209710.1
description hypothetical protein PRUPE_ppa012487mg [Prunus persica]
swissprot
ID Q6PC91
description Transcription factor BTF3 homolog 4 OS=Danio rerio GN=btf3l4 PE=2 SV=1
trembl
ID M5WB01
description Nascent polypeptide-associated complex subunit beta OS=Prunus persica GN=PRUPE_ppa012487mg PE=3 SV=1
Gene Ontology
ID GO:0006351
description transcription factor btf3 homolog 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44094: 11085-28601
cDNA
(Sanger)
(ID:Location)		 020_N13.ab1: 11140-28601 , 022_P11.ab1: 11122-28553 , 035_B12.ab1: 11158-28571

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004662_030 0.0 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
2 Hb_002097_110 0.0364055688 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_009711_030 0.0573189971 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
4 Hb_133271_020 0.0591175078 - - prohibitin, putative [Ricinus communis]
5 Hb_000376_050 0.0597909862 - - polyadenylate-binding protein, putative [Ricinus communis]
6 Hb_015001_020 0.059842619 - - PREDICTED: la-related protein 6B [Jatropha curcas]
7 Hb_022250_040 0.0608516103 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
8 Hb_000371_080 0.068444918 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
9 Hb_000975_290 0.0706975584 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
10 Hb_118419_020 0.0722879139 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
11 Hb_027472_180 0.0727889281 - - hypothetical protein L484_016229 [Morus notabilis]
12 Hb_001776_110 0.0729581176 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
13 Hb_006569_020 0.0730776461 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
14 Hb_002078_450 0.073509657 - - nuclear transport factor, putative [Ricinus communis]
15 Hb_000956_010 0.0753548429 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
16 Hb_158092_070 0.075638275 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
17 Hb_007426_230 0.0758478871 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
18 Hb_003086_020 0.0760221811 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
19 Hb_001427_120 0.07648549 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
20 Hb_003540_040 0.0767579321 - - hypothetical protein JCGZ_20979 [Jatropha curcas]

Gene co-expression network

sample Hb_004662_030 Hb_004662_030 Hb_002097_110 Hb_002097_110 Hb_004662_030--Hb_002097_110 Hb_009711_030 Hb_009711_030 Hb_004662_030--Hb_009711_030 Hb_133271_020 Hb_133271_020 Hb_004662_030--Hb_133271_020 Hb_000376_050 Hb_000376_050 Hb_004662_030--Hb_000376_050 Hb_015001_020 Hb_015001_020 Hb_004662_030--Hb_015001_020 Hb_022250_040 Hb_022250_040 Hb_004662_030--Hb_022250_040 Hb_002097_110--Hb_015001_020 Hb_007426_230 Hb_007426_230 Hb_002097_110--Hb_007426_230 Hb_002097_110--Hb_009711_030 Hb_027472_180 Hb_027472_180 Hb_002097_110--Hb_027472_180 Hb_001824_070 Hb_001824_070 Hb_002097_110--Hb_001824_070 Hb_009711_030--Hb_022250_040 Hb_125000_010 Hb_125000_010 Hb_009711_030--Hb_125000_010 Hb_000371_080 Hb_000371_080 Hb_009711_030--Hb_000371_080 Hb_001008_060 Hb_001008_060 Hb_009711_030--Hb_001008_060 Hb_009711_030--Hb_001824_070 Hb_158092_070 Hb_158092_070 Hb_133271_020--Hb_158092_070 Hb_000975_290 Hb_000975_290 Hb_133271_020--Hb_000975_290 Hb_001030_120 Hb_001030_120 Hb_133271_020--Hb_001030_120 Hb_002686_270 Hb_002686_270 Hb_133271_020--Hb_002686_270 Hb_004223_130 Hb_004223_130 Hb_133271_020--Hb_004223_130 Hb_000956_010 Hb_000956_010 Hb_000376_050--Hb_000956_010 Hb_002603_100 Hb_002603_100 Hb_000376_050--Hb_002603_100 Hb_001427_120 Hb_001427_120 Hb_000376_050--Hb_001427_120 Hb_001243_050 Hb_001243_050 Hb_000376_050--Hb_001243_050 Hb_021068_050 Hb_021068_050 Hb_000376_050--Hb_021068_050 Hb_028872_140 Hb_028872_140 Hb_015001_020--Hb_028872_140 Hb_000032_570 Hb_000032_570 Hb_015001_020--Hb_000032_570 Hb_000853_110 Hb_000853_110 Hb_015001_020--Hb_000853_110 Hb_005062_070 Hb_005062_070 Hb_015001_020--Hb_005062_070 Hb_022250_040--Hb_000371_080 Hb_002078_450 Hb_002078_450 Hb_022250_040--Hb_002078_450 Hb_022250_040--Hb_002603_100 Hb_022250_040--Hb_125000_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
143.306 29.829 19.14 34.7091 127.097 154.097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
164.937 167.344 134.688 64.023 27.1483

CAGE analysis