Hb_004668_090

Information

Type -
Description -
Location Contig4668: 79909-83345
Sequence    

Annotation

kegg
ID rcu:RCOM_0836410
description membrane associated ring finger 1,8, putative
nr
ID XP_012067641.1
description PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]
swissprot
ID F4JKK0
description Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana GN=SUD1 PE=1 SV=1
trembl
ID A0A067L1Y9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15605 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44105: 79935-83336 , PASA_asmbl_44106: 80060-83186
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004668_090 0.0 - - PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]
2 Hb_002968_080 0.0606090329 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
3 Hb_179306_020 0.0786745675 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
4 Hb_005663_110 0.0806545912 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
5 Hb_000062_270 0.0817650661 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
6 Hb_001662_100 0.0849957154 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
7 Hb_000111_320 0.0851229363 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
8 Hb_002414_050 0.0861944683 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
9 Hb_000363_190 0.0913081811 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
10 Hb_000238_030 0.0919874166 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_001258_110 0.0933397215 - - transporter, putative [Ricinus communis]
12 Hb_000115_150 0.0942292867 - - PREDICTED: IST1 homolog [Jatropha curcas]
13 Hb_000365_400 0.0948937632 - - metal ion transporter, putative [Ricinus communis]
14 Hb_011674_020 0.0956845916 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
15 Hb_000120_370 0.0958718478 - - type 2 diacylglycerol acyltransferase [Ricinus communis]
16 Hb_000110_190 0.0960489961 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
17 Hb_001014_210 0.0963364979 - - CYP51 [Hevea brasiliensis]
18 Hb_003086_170 0.0965903445 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]
19 Hb_007558_100 0.0967334826 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]
20 Hb_000984_170 0.09715387 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]

Gene co-expression network

sample Hb_004668_090 Hb_004668_090 Hb_002968_080 Hb_002968_080 Hb_004668_090--Hb_002968_080 Hb_179306_020 Hb_179306_020 Hb_004668_090--Hb_179306_020 Hb_005663_110 Hb_005663_110 Hb_004668_090--Hb_005663_110 Hb_000062_270 Hb_000062_270 Hb_004668_090--Hb_000062_270 Hb_001662_100 Hb_001662_100 Hb_004668_090--Hb_001662_100 Hb_000111_320 Hb_000111_320 Hb_004668_090--Hb_000111_320 Hb_012733_070 Hb_012733_070 Hb_002968_080--Hb_012733_070 Hb_002968_080--Hb_179306_020 Hb_000110_190 Hb_000110_190 Hb_002968_080--Hb_000110_190 Hb_000138_100 Hb_000138_100 Hb_002968_080--Hb_000138_100 Hb_013726_090 Hb_013726_090 Hb_002968_080--Hb_013726_090 Hb_000981_030 Hb_000981_030 Hb_179306_020--Hb_000981_030 Hb_179306_020--Hb_005663_110 Hb_003055_040 Hb_003055_040 Hb_179306_020--Hb_003055_040 Hb_011674_020 Hb_011674_020 Hb_179306_020--Hb_011674_020 Hb_039946_050 Hb_039946_050 Hb_179306_020--Hb_039946_050 Hb_003544_030 Hb_003544_030 Hb_005663_110--Hb_003544_030 Hb_001434_080 Hb_001434_080 Hb_005663_110--Hb_001434_080 Hb_004677_050 Hb_004677_050 Hb_005663_110--Hb_004677_050 Hb_000984_170 Hb_000984_170 Hb_005663_110--Hb_000984_170 Hb_000327_250 Hb_000327_250 Hb_005663_110--Hb_000327_250 Hb_005663_110--Hb_039946_050 Hb_001860_030 Hb_001860_030 Hb_000062_270--Hb_001860_030 Hb_000170_090 Hb_000170_090 Hb_000062_270--Hb_000170_090 Hb_000258_110 Hb_000258_110 Hb_000062_270--Hb_000258_110 Hb_013399_020 Hb_013399_020 Hb_000062_270--Hb_013399_020 Hb_004586_220 Hb_004586_220 Hb_000062_270--Hb_004586_220 Hb_002414_050 Hb_002414_050 Hb_001662_100--Hb_002414_050 Hb_009569_040 Hb_009569_040 Hb_001662_100--Hb_009569_040 Hb_002883_030 Hb_002883_030 Hb_001662_100--Hb_002883_030 Hb_003544_160 Hb_003544_160 Hb_001662_100--Hb_003544_160 Hb_000787_160 Hb_000787_160 Hb_001662_100--Hb_000787_160 Hb_003878_150 Hb_003878_150 Hb_001662_100--Hb_003878_150 Hb_000392_430 Hb_000392_430 Hb_000111_320--Hb_000392_430 Hb_000466_140 Hb_000466_140 Hb_000111_320--Hb_000466_140 Hb_001314_050 Hb_001314_050 Hb_000111_320--Hb_001314_050 Hb_001247_310 Hb_001247_310 Hb_000111_320--Hb_001247_310 Hb_000111_320--Hb_000138_100 Hb_002811_180 Hb_002811_180 Hb_000111_320--Hb_002811_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.31938 6.43005 6.16367 13.1028 7.91224 8.03061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.26892 6.4193 4.9584 12.882 9.73156

CAGE analysis