Hb_004668_110

Information

Type -
Description -
Location Contig4668: 86691-88811
Sequence    

Annotation

kegg
ID rcu:RCOM_0836400
description hypothetical protein
nr
ID XP_002522434.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S8W5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0836400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44108: 87543-87669
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004668_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_184134_010 0.1312947502 - - PREDICTED: variable charge X-linked protein 3B [Jatropha curcas]
3 Hb_044662_060 0.1410219005 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
4 Hb_002750_050 0.153617256 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
5 Hb_000189_510 0.1593656055 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
6 Hb_001373_110 0.1596445021 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
7 Hb_002450_040 0.1607318627 - - PREDICTED: DNA-directed RNA polymerases II and V subunit 6B [Vitis vinifera]
8 Hb_003580_030 0.1612841032 - - fimbrin, putative [Ricinus communis]
9 Hb_001085_260 0.1613082288 - - PREDICTED: uncharacterized protein LOC105633184 [Jatropha curcas]
10 Hb_001427_020 0.1618404522 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
11 Hb_004994_320 0.1655307463 - - PREDICTED: putative ripening-related protein 1 [Cicer arietinum]
12 Hb_007951_040 0.1688390082 - - signal peptidase family protein [Populus trichocarpa]
13 Hb_002836_140 0.1707476773 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
14 Hb_000700_150 0.1709520693 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002184_150 0.1735068622 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_000138_130 0.1744912174 - - hypothetical protein JCGZ_25540 [Jatropha curcas]
17 Hb_001486_170 0.1764046094 - - PREDICTED: syntaxin-132 [Jatropha curcas]
18 Hb_000392_230 0.1767469305 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000453_040 0.1784081754 - - Triosephosphate isomerase, cytosolic [Gossypium arboreum]
20 Hb_000170_200 0.1793559922 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_004668_110 Hb_004668_110 Hb_184134_010 Hb_184134_010 Hb_004668_110--Hb_184134_010 Hb_044662_060 Hb_044662_060 Hb_004668_110--Hb_044662_060 Hb_002750_050 Hb_002750_050 Hb_004668_110--Hb_002750_050 Hb_000189_510 Hb_000189_510 Hb_004668_110--Hb_000189_510 Hb_001373_110 Hb_001373_110 Hb_004668_110--Hb_001373_110 Hb_002450_040 Hb_002450_040 Hb_004668_110--Hb_002450_040 Hb_003580_030 Hb_003580_030 Hb_184134_010--Hb_003580_030 Hb_184134_010--Hb_044662_060 Hb_000556_150 Hb_000556_150 Hb_184134_010--Hb_000556_150 Hb_006269_020 Hb_006269_020 Hb_184134_010--Hb_006269_020 Hb_098315_070 Hb_098315_070 Hb_184134_010--Hb_098315_070 Hb_002498_140 Hb_002498_140 Hb_044662_060--Hb_002498_140 Hb_005463_130 Hb_005463_130 Hb_044662_060--Hb_005463_130 Hb_000365_100 Hb_000365_100 Hb_044662_060--Hb_000365_100 Hb_001501_080 Hb_001501_080 Hb_044662_060--Hb_001501_080 Hb_000072_090 Hb_000072_090 Hb_044662_060--Hb_000072_090 Hb_001486_170 Hb_001486_170 Hb_044662_060--Hb_001486_170 Hb_003430_090 Hb_003430_090 Hb_002750_050--Hb_003430_090 Hb_000392_370 Hb_000392_370 Hb_002750_050--Hb_000392_370 Hb_041290_010 Hb_041290_010 Hb_002750_050--Hb_041290_010 Hb_000207_190 Hb_000207_190 Hb_002750_050--Hb_000207_190 Hb_013726_080 Hb_013726_080 Hb_002750_050--Hb_013726_080 Hb_000915_110 Hb_000915_110 Hb_002750_050--Hb_000915_110 Hb_000189_510--Hb_002750_050 Hb_003376_050 Hb_003376_050 Hb_000189_510--Hb_003376_050 Hb_001266_140 Hb_001266_140 Hb_000189_510--Hb_001266_140 Hb_002942_060 Hb_002942_060 Hb_000189_510--Hb_002942_060 Hb_002836_140 Hb_002836_140 Hb_000189_510--Hb_002836_140 Hb_000797_050 Hb_000797_050 Hb_000189_510--Hb_000797_050 Hb_140833_010 Hb_140833_010 Hb_001373_110--Hb_140833_010 Hb_011013_010 Hb_011013_010 Hb_001373_110--Hb_011013_010 Hb_000661_140 Hb_000661_140 Hb_001373_110--Hb_000661_140 Hb_000976_260 Hb_000976_260 Hb_001373_110--Hb_000976_260 Hb_000012_020 Hb_000012_020 Hb_001373_110--Hb_000012_020 Hb_001373_110--Hb_002450_040 Hb_001377_030 Hb_001377_030 Hb_002450_040--Hb_001377_030 Hb_000926_180 Hb_000926_180 Hb_002450_040--Hb_000926_180 Hb_007313_090 Hb_007313_090 Hb_002450_040--Hb_007313_090 Hb_000297_110 Hb_000297_110 Hb_002450_040--Hb_000297_110 Hb_002450_040--Hb_000976_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.446075 0.0852329 1.35968 0.672099 0.842141 1.13204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.528462 0.415299 0.289198 0.170633 0.319871

CAGE analysis