Hb_004669_030

Information

Type -
Description -
Location Contig4669: 60611-62023
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44110: 61336-76224
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004669_030 0.0 - - -
2 Hb_000671_120 0.089396409 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
3 Hb_000635_070 0.1010146227 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
4 Hb_001233_020 0.1132288881 - - hypothetical protein JCGZ_04109 [Jatropha curcas]
5 Hb_132180_010 0.1148568078 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
6 Hb_001220_010 0.1168764332 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
7 Hb_002562_110 0.1327213111 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
8 Hb_000342_160 0.1346767583 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
9 Hb_002168_010 0.1347733731 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X4 [Vitis vinifera]
10 Hb_000641_020 0.13996102 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
11 Hb_082006_010 0.1408110864 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000125_020 0.1410508681 transcription factor TF Family: mTERF -
13 Hb_000016_060 0.1465073272 - - mads box protein, putative [Ricinus communis]
14 Hb_001747_030 0.1469690948 - - hypothetical protein F383_08210 [Gossypium arboreum]
15 Hb_016604_030 0.1482456666 - - histone H4 [Zea mays]
16 Hb_009270_030 0.1491796653 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
17 Hb_000015_070 0.1495154981 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
18 Hb_011214_100 0.1503392794 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
19 Hb_029142_070 0.1548433796 - - -
20 Hb_182713_020 0.1557526855 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]

Gene co-expression network

sample Hb_004669_030 Hb_004669_030 Hb_000671_120 Hb_000671_120 Hb_004669_030--Hb_000671_120 Hb_000635_070 Hb_000635_070 Hb_004669_030--Hb_000635_070 Hb_001233_020 Hb_001233_020 Hb_004669_030--Hb_001233_020 Hb_132180_010 Hb_132180_010 Hb_004669_030--Hb_132180_010 Hb_001220_010 Hb_001220_010 Hb_004669_030--Hb_001220_010 Hb_002562_110 Hb_002562_110 Hb_004669_030--Hb_002562_110 Hb_000671_120--Hb_132180_010 Hb_000671_120--Hb_001220_010 Hb_000342_160 Hb_000342_160 Hb_000671_120--Hb_000342_160 Hb_000671_120--Hb_001233_020 Hb_011037_020 Hb_011037_020 Hb_000671_120--Hb_011037_020 Hb_082006_010 Hb_082006_010 Hb_000635_070--Hb_082006_010 Hb_009270_030 Hb_009270_030 Hb_000635_070--Hb_009270_030 Hb_016604_030 Hb_016604_030 Hb_000635_070--Hb_016604_030 Hb_129672_010 Hb_129672_010 Hb_000635_070--Hb_129672_010 Hb_000635_070--Hb_002562_110 Hb_001233_020--Hb_001220_010 Hb_001233_020--Hb_132180_010 Hb_080601_020 Hb_080601_020 Hb_001233_020--Hb_080601_020 Hb_000994_110 Hb_000994_110 Hb_001233_020--Hb_000994_110 Hb_002078_260 Hb_002078_260 Hb_132180_010--Hb_002078_260 Hb_132180_010--Hb_000635_070 Hb_132180_010--Hb_001220_010 Hb_001220_010--Hb_080601_020 Hb_007894_230 Hb_007894_230 Hb_001220_010--Hb_007894_230 Hb_002562_110--Hb_082006_010 Hb_002562_110--Hb_002078_260 Hb_002562_110--Hb_009270_030 Hb_000016_060 Hb_000016_060 Hb_002562_110--Hb_000016_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.706169 0.403415 0.761998 7.56271 1.2123 4.21274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.88781 3.42213 1.02488 1.06525 0.552985

CAGE analysis