Hb_004672_040

Information

Type -
Description -
Location Contig4672: 25394-37141
Sequence    

Annotation

kegg
ID pop:POPTR_0004s21450g
description SEC1-family transport family protein
nr
ID XP_011040777.1
description PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
swissprot
ID Q9SL48
description SEC1 family transport protein SLY1 OS=Arabidopsis thaliana GN=SLY1 PE=1 SV=1
trembl
ID B9MYY5
description SEC1-family transport family protein OS=Populus trichocarpa GN=POPTR_0004s21450g PE=4 SV=1
Gene Ontology
ID GO:0005623
description sec1 family transport protein sly1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44115: 25399-27845 , PASA_asmbl_44116: 28163-30387 , PASA_asmbl_44117: 30672-31462 , PASA_asmbl_44118: 35914-36959
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004672_040 0.0 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
2 Hb_001163_100 0.0595696597 - - serine/threonine protein kinase, putative [Ricinus communis]
3 Hb_000050_190 0.0670886875 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003168_110 0.0705357274 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
5 Hb_000207_330 0.0705795201 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
6 Hb_000192_080 0.0748468578 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]
7 Hb_006915_030 0.0757926603 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
8 Hb_065525_040 0.0775538988 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
9 Hb_000009_560 0.0815856518 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
10 Hb_000406_140 0.0822014836 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000340_230 0.0867671591 - - synapse-associated protein, putative [Ricinus communis]
12 Hb_001799_180 0.0877664879 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
13 Hb_001766_080 0.0880970926 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
14 Hb_000665_060 0.0885760301 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
15 Hb_001227_060 0.0894660989 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20740 [Jatropha curcas]
16 Hb_005291_050 0.0910722709 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
17 Hb_000260_010 0.0911842828 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
18 Hb_003504_030 0.0915471746 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
19 Hb_000072_120 0.0919464731 - - serine/threonine protein kinase, putative [Ricinus communis]
20 Hb_164010_030 0.0927777982 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]

Gene co-expression network

sample Hb_004672_040 Hb_004672_040 Hb_001163_100 Hb_001163_100 Hb_004672_040--Hb_001163_100 Hb_000050_190 Hb_000050_190 Hb_004672_040--Hb_000050_190 Hb_003168_110 Hb_003168_110 Hb_004672_040--Hb_003168_110 Hb_000207_330 Hb_000207_330 Hb_004672_040--Hb_000207_330 Hb_000192_080 Hb_000192_080 Hb_004672_040--Hb_000192_080 Hb_006915_030 Hb_006915_030 Hb_004672_040--Hb_006915_030 Hb_000260_010 Hb_000260_010 Hb_001163_100--Hb_000260_010 Hb_000340_230 Hb_000340_230 Hb_001163_100--Hb_000340_230 Hb_164010_030 Hb_164010_030 Hb_001163_100--Hb_164010_030 Hb_000009_560 Hb_000009_560 Hb_001163_100--Hb_000009_560 Hb_001377_490 Hb_001377_490 Hb_001163_100--Hb_001377_490 Hb_000599_180 Hb_000599_180 Hb_000050_190--Hb_000599_180 Hb_009548_020 Hb_009548_020 Hb_000050_190--Hb_009548_020 Hb_005291_050 Hb_005291_050 Hb_000050_190--Hb_005291_050 Hb_000050_190--Hb_003168_110 Hb_006634_070 Hb_006634_070 Hb_000050_190--Hb_006634_070 Hb_001329_140 Hb_001329_140 Hb_003168_110--Hb_001329_140 Hb_000684_250 Hb_000684_250 Hb_003168_110--Hb_000684_250 Hb_003494_020 Hb_003494_020 Hb_003168_110--Hb_003494_020 Hb_000590_050 Hb_000590_050 Hb_003168_110--Hb_000590_050 Hb_003168_110--Hb_000009_560 Hb_000890_060 Hb_000890_060 Hb_003168_110--Hb_000890_060 Hb_000768_200 Hb_000768_200 Hb_000207_330--Hb_000768_200 Hb_065525_040 Hb_065525_040 Hb_000207_330--Hb_065525_040 Hb_006478_020 Hb_006478_020 Hb_000207_330--Hb_006478_020 Hb_000665_060 Hb_000665_060 Hb_000207_330--Hb_000665_060 Hb_005054_110 Hb_005054_110 Hb_000207_330--Hb_005054_110 Hb_007638_030 Hb_007638_030 Hb_000192_080--Hb_007638_030 Hb_000192_080--Hb_000009_560 Hb_012322_010 Hb_012322_010 Hb_000192_080--Hb_012322_010 Hb_000192_080--Hb_000665_060 Hb_000208_280 Hb_000208_280 Hb_000192_080--Hb_000208_280 Hb_004567_090 Hb_004567_090 Hb_000192_080--Hb_004567_090 Hb_001198_100 Hb_001198_100 Hb_006915_030--Hb_001198_100 Hb_002942_100 Hb_002942_100 Hb_006915_030--Hb_002942_100 Hb_000571_110 Hb_000571_110 Hb_006915_030--Hb_000571_110 Hb_000723_130 Hb_000723_130 Hb_006915_030--Hb_000723_130 Hb_006915_030--Hb_009548_020 Hb_004225_050 Hb_004225_050 Hb_006915_030--Hb_004225_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.2307 17.191 11.7877 26.0769 11.2842 20.2321
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0075 12.7262 27.7378 15.156 20.3138

CAGE analysis