Hb_004676_010

Information

Type -
Description -
Location Contig4676: 20278-24310
Sequence    

Annotation

kegg
ID pop:POPTR_0006s03790g
description POPTRDRAFT_417170; hypothetical protein
nr
ID XP_012082555.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9C977
description Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=2 SV=1
trembl
ID A0A067KAH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16639 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44119: 20266-24265 , PASA_asmbl_44120: 21550-21945
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004676_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Jatropha curcas]
2 Hb_000579_230 0.0561815255 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
3 Hb_012395_140 0.0626646197 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
4 Hb_000703_150 0.0658129343 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A [Jatropha curcas]
5 Hb_009615_170 0.0658696224 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
6 Hb_000395_070 0.0663989121 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
7 Hb_001754_040 0.0672993269 transcription factor TF Family: TRAF PREDICTED: uncharacterized protein LOC105643434 [Jatropha curcas]
8 Hb_002815_030 0.067783024 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
9 Hb_000592_030 0.0682179661 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
10 Hb_000684_250 0.0682430832 - - PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]
11 Hb_000590_050 0.0703809615 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
12 Hb_001550_060 0.0731972575 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
13 Hb_001199_100 0.0733619087 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
14 Hb_011618_090 0.073834187 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
15 Hb_000008_290 0.0743592965 - - PREDICTED: protein SAND [Jatropha curcas]
16 Hb_000890_060 0.0748100568 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
17 Hb_001814_030 0.0752465586 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
18 Hb_000390_320 0.0762765619 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
19 Hb_003060_060 0.0763555296 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
20 Hb_001329_140 0.0778497182 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]

Gene co-expression network

sample Hb_004676_010 Hb_004676_010 Hb_000579_230 Hb_000579_230 Hb_004676_010--Hb_000579_230 Hb_012395_140 Hb_012395_140 Hb_004676_010--Hb_012395_140 Hb_000703_150 Hb_000703_150 Hb_004676_010--Hb_000703_150 Hb_009615_170 Hb_009615_170 Hb_004676_010--Hb_009615_170 Hb_000395_070 Hb_000395_070 Hb_004676_010--Hb_000395_070 Hb_001754_040 Hb_001754_040 Hb_004676_010--Hb_001754_040 Hb_000579_230--Hb_012395_140 Hb_002815_030 Hb_002815_030 Hb_000579_230--Hb_002815_030 Hb_000579_230--Hb_000395_070 Hb_104061_020 Hb_104061_020 Hb_000579_230--Hb_104061_020 Hb_009270_020 Hb_009270_020 Hb_000579_230--Hb_009270_020 Hb_012395_140--Hb_000395_070 Hb_001550_060 Hb_001550_060 Hb_012395_140--Hb_001550_060 Hb_002329_040 Hb_002329_040 Hb_012395_140--Hb_002329_040 Hb_012395_140--Hb_002815_030 Hb_001814_030 Hb_001814_030 Hb_012395_140--Hb_001814_030 Hb_002111_070 Hb_002111_070 Hb_000703_150--Hb_002111_070 Hb_000739_100 Hb_000739_100 Hb_000703_150--Hb_000739_100 Hb_000390_320 Hb_000390_320 Hb_000703_150--Hb_000390_320 Hb_000083_120 Hb_000083_120 Hb_000703_150--Hb_000083_120 Hb_000703_150--Hb_009615_170 Hb_001821_090 Hb_001821_090 Hb_009615_170--Hb_001821_090 Hb_009615_170--Hb_012395_140 Hb_004884_150 Hb_004884_150 Hb_009615_170--Hb_004884_150 Hb_159558_010 Hb_159558_010 Hb_009615_170--Hb_159558_010 Hb_009615_170--Hb_000579_230 Hb_000174_060 Hb_000174_060 Hb_009615_170--Hb_000174_060 Hb_000740_100 Hb_000740_100 Hb_000395_070--Hb_000740_100 Hb_003060_060 Hb_003060_060 Hb_000395_070--Hb_003060_060 Hb_000412_010 Hb_000412_010 Hb_000395_070--Hb_000412_010 Hb_000395_070--Hb_002815_030 Hb_001754_040--Hb_000579_230 Hb_001754_040--Hb_000395_070 Hb_011618_090 Hb_011618_090 Hb_001754_040--Hb_011618_090 Hb_000789_250 Hb_000789_250 Hb_001754_040--Hb_000789_250 Hb_140049_080 Hb_140049_080 Hb_001754_040--Hb_140049_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.8196 23.893 14.0362 16.5982 17.4952 27.3801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4758 11.2237 20.7637 26.0787 18.4964

CAGE analysis