Hb_004678_020

Information

Type -
Description -
Location Contig4678: 25915-29959
Sequence    

Annotation

kegg
ID rcu:RCOM_1287280
description Protein YIF1A, putative
nr
ID XP_012065189.1
description PREDICTED: protein YIF1B [Jatropha curcas]
swissprot
ID Q6GN58
description Protein YIF1B-A OS=Xenopus laevis GN=yif1b-a PE=2 SV=1
trembl
ID A0A067L622
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20867 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44133: 29387-29901 , PASA_asmbl_44134: 26068-29964
cDNA
(Sanger)
(ID:Location)		 012_H15.ab1: 26318-29964 , 034_N20.ab1: 26208-29964

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004678_020 0.0 - - PREDICTED: protein YIF1B [Jatropha curcas]
2 Hb_005701_040 0.063178351 - - cellular nucleic acid binding protein, putative [Ricinus communis]
3 Hb_000001_180 0.0661782453 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
4 Hb_003384_030 0.0684448978 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
5 Hb_010222_080 0.0711046585 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
6 Hb_023001_020 0.0713563445 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
7 Hb_002942_220 0.0743112219 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
8 Hb_004701_030 0.0770227117 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
9 Hb_000139_250 0.0770804681 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
10 Hb_002818_040 0.0778622706 - - tRNA synthetase-related family protein [Populus trichocarpa]
11 Hb_000236_280 0.0792350407 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
12 Hb_001504_160 0.0815358694 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
13 Hb_017168_010 0.0828375074 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012305_070 0.0833324004 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012654_010 0.0836258708 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
16 Hb_003656_160 0.0843589293 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
17 Hb_004724_360 0.0864724687 - - OTU-like cysteine protease family protein [Populus trichocarpa]
18 Hb_001584_290 0.0871272543 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
19 Hb_000340_510 0.087651625 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
20 Hb_005914_230 0.0882221001 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004678_020 Hb_004678_020 Hb_005701_040 Hb_005701_040 Hb_004678_020--Hb_005701_040 Hb_000001_180 Hb_000001_180 Hb_004678_020--Hb_000001_180 Hb_003384_030 Hb_003384_030 Hb_004678_020--Hb_003384_030 Hb_010222_080 Hb_010222_080 Hb_004678_020--Hb_010222_080 Hb_023001_020 Hb_023001_020 Hb_004678_020--Hb_023001_020 Hb_002942_220 Hb_002942_220 Hb_004678_020--Hb_002942_220 Hb_001504_150 Hb_001504_150 Hb_005701_040--Hb_001504_150 Hb_012305_070 Hb_012305_070 Hb_005701_040--Hb_012305_070 Hb_005914_230 Hb_005914_230 Hb_005701_040--Hb_005914_230 Hb_005701_040--Hb_023001_020 Hb_003656_160 Hb_003656_160 Hb_005701_040--Hb_003656_160 Hb_000001_180--Hb_003384_030 Hb_002818_040 Hb_002818_040 Hb_000001_180--Hb_002818_040 Hb_004724_360 Hb_004724_360 Hb_000001_180--Hb_004724_360 Hb_000001_180--Hb_005914_230 Hb_005314_010 Hb_005314_010 Hb_000001_180--Hb_005314_010 Hb_000462_150 Hb_000462_150 Hb_003384_030--Hb_000462_150 Hb_003384_030--Hb_005914_230 Hb_003384_030--Hb_002818_040 Hb_018663_020 Hb_018663_020 Hb_003384_030--Hb_018663_020 Hb_001969_040 Hb_001969_040 Hb_003384_030--Hb_001969_040 Hb_001584_290 Hb_001584_290 Hb_010222_080--Hb_001584_290 Hb_010222_080--Hb_002942_220 Hb_017168_010 Hb_017168_010 Hb_010222_080--Hb_017168_010 Hb_000139_250 Hb_000139_250 Hb_010222_080--Hb_000139_250 Hb_004162_280 Hb_004162_280 Hb_010222_080--Hb_004162_280 Hb_004701_030 Hb_004701_030 Hb_023001_020--Hb_004701_030 Hb_023001_020--Hb_000139_250 Hb_000104_080 Hb_000104_080 Hb_023001_020--Hb_000104_080 Hb_000923_040 Hb_000923_040 Hb_023001_020--Hb_000923_040 Hb_002942_220--Hb_000139_250 Hb_002400_180 Hb_002400_180 Hb_002942_220--Hb_002400_180 Hb_002942_220--Hb_017168_010 Hb_144787_030 Hb_144787_030 Hb_002942_220--Hb_144787_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.7141 41.7175 27.2569 20.0658 118.247 94.3545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.7019 37.2301 46.3611 18.4133 12.4072

CAGE analysis