Hb_004678_040

Information

Type -
Description -
Location Contig4678: 43572-50940
Sequence    

Annotation

kegg
ID rcu:RCOM_0452820
description hypothetical protein
nr
ID XP_012065185.1
description PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
swissprot
ID Q67XL4
description Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1
trembl
ID B9T543
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0452820 PE=4 SV=1
Gene Ontology
ID GO:0003723
description uncharacterized crm domain-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44137: 43659-50279 , PASA_asmbl_44139: 47053-47553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004678_040 0.0 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
2 Hb_000008_470 0.0617139966 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
3 Hb_000521_320 0.067897861 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
4 Hb_000302_270 0.0698990024 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
5 Hb_000853_430 0.0727704236 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
6 Hb_025645_010 0.0799011248 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
7 Hb_002256_030 0.0805801746 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000230_200 0.0807327976 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
9 Hb_000416_040 0.0843232886 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
10 Hb_001305_010 0.0854646864 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
11 Hb_001662_070 0.0880410818 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
12 Hb_000010_400 0.0893598328 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
13 Hb_006817_010 0.0909797437 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
14 Hb_002188_130 0.0910314366 - - PREDICTED: uncharacterized protein LOC105650815 isoform X2 [Jatropha curcas]
15 Hb_002950_100 0.0917699002 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
16 Hb_000661_290 0.0920075892 - - PREDICTED: NAD(H) kinase 1-like isoform X1 [Populus euphratica]
17 Hb_000771_120 0.0931178145 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
18 Hb_055488_010 0.0946527776 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
19 Hb_003078_040 0.094742579 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
20 Hb_000175_460 0.0947729034 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004678_040 Hb_004678_040 Hb_000008_470 Hb_000008_470 Hb_004678_040--Hb_000008_470 Hb_000521_320 Hb_000521_320 Hb_004678_040--Hb_000521_320 Hb_000302_270 Hb_000302_270 Hb_004678_040--Hb_000302_270 Hb_000853_430 Hb_000853_430 Hb_004678_040--Hb_000853_430 Hb_025645_010 Hb_025645_010 Hb_004678_040--Hb_025645_010 Hb_002256_030 Hb_002256_030 Hb_004678_040--Hb_002256_030 Hb_001305_010 Hb_001305_010 Hb_000008_470--Hb_001305_010 Hb_004324_070 Hb_004324_070 Hb_000008_470--Hb_004324_070 Hb_000175_460 Hb_000175_460 Hb_000008_470--Hb_000175_460 Hb_000230_200 Hb_000230_200 Hb_000008_470--Hb_000230_200 Hb_000008_470--Hb_000853_430 Hb_000521_320--Hb_000302_270 Hb_000010_400 Hb_000010_400 Hb_000521_320--Hb_000010_400 Hb_002950_100 Hb_002950_100 Hb_000521_320--Hb_002950_100 Hb_011995_010 Hb_011995_010 Hb_000521_320--Hb_011995_010 Hb_000521_320--Hb_025645_010 Hb_000185_070 Hb_000185_070 Hb_000302_270--Hb_000185_070 Hb_000771_120 Hb_000771_120 Hb_000302_270--Hb_000771_120 Hb_000302_270--Hb_000010_400 Hb_000789_060 Hb_000789_060 Hb_000302_270--Hb_000789_060 Hb_000853_430--Hb_001305_010 Hb_004093_090 Hb_004093_090 Hb_000853_430--Hb_004093_090 Hb_012389_020 Hb_012389_020 Hb_000853_430--Hb_012389_020 Hb_000853_430--Hb_000302_270 Hb_001662_070 Hb_001662_070 Hb_025645_010--Hb_001662_070 Hb_025645_010--Hb_000771_120 Hb_000787_050 Hb_000787_050 Hb_025645_010--Hb_000787_050 Hb_003092_040 Hb_003092_040 Hb_025645_010--Hb_003092_040 Hb_001579_030 Hb_001579_030 Hb_025645_010--Hb_001579_030 Hb_007477_070 Hb_007477_070 Hb_025645_010--Hb_007477_070 Hb_036790_100 Hb_036790_100 Hb_002256_030--Hb_036790_100 Hb_031527_040 Hb_031527_040 Hb_002256_030--Hb_031527_040 Hb_004032_360 Hb_004032_360 Hb_002256_030--Hb_004032_360 Hb_001552_020 Hb_001552_020 Hb_002256_030--Hb_001552_020 Hb_001242_060 Hb_001242_060 Hb_002256_030--Hb_001242_060 Hb_002739_100 Hb_002739_100 Hb_002256_030--Hb_002739_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9583 5.94795 7.4883 5.47222 6.19972 6.93747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.29014 10.0923 9.89065 3.15791 3.59753

CAGE analysis