Hb_004679_030

Information

Type -
Description -
Location Contig4679: 39353-42548
Sequence    

Annotation

kegg
ID pop:POPTR_0009s14200g
description POPTRDRAFT_1086376; hypothetical protein
nr
ID XP_012084871.1
description PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
swissprot
ID Q3EBZ2
description F-box protein SKIP23 OS=Arabidopsis thaliana GN=SKIP23 PE=1 SV=1
trembl
ID A0A067JTA2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20944 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein skip23-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44146: 39385-47278 , PASA_asmbl_44148: 42350-42836
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004679_030 0.0 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
2 Hb_000809_230 0.0417933499 - - PREDICTED: uncharacterized protein LOC105639681 isoform X1 [Jatropha curcas]
3 Hb_003544_160 0.0615834616 - - -
4 Hb_009296_040 0.0641324051 - - hypothetical protein L484_007435 [Morus notabilis]
5 Hb_001377_350 0.0645100287 - - PREDICTED: exportin-2 [Jatropha curcas]
6 Hb_005582_040 0.0649380901 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
7 Hb_011228_010 0.0659437147 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000359_210 0.0669182444 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002027_080 0.0670007988 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
10 Hb_000441_090 0.0671765657 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
11 Hb_002890_130 0.0675671168 - - tip120, putative [Ricinus communis]
12 Hb_002897_090 0.0676749788 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003544_050 0.0684246981 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
14 Hb_005650_010 0.0688921164 - - ATP binding protein, putative [Ricinus communis]
15 Hb_002874_110 0.0721064711 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
16 Hb_004374_110 0.0734834619 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
17 Hb_002749_060 0.0736870053 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
18 Hb_003040_050 0.073906181 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
19 Hb_013726_090 0.0745419115 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
20 Hb_001876_010 0.0755377611 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004679_030 Hb_004679_030 Hb_000809_230 Hb_000809_230 Hb_004679_030--Hb_000809_230 Hb_003544_160 Hb_003544_160 Hb_004679_030--Hb_003544_160 Hb_009296_040 Hb_009296_040 Hb_004679_030--Hb_009296_040 Hb_001377_350 Hb_001377_350 Hb_004679_030--Hb_001377_350 Hb_005582_040 Hb_005582_040 Hb_004679_030--Hb_005582_040 Hb_011228_010 Hb_011228_010 Hb_004679_030--Hb_011228_010 Hb_000809_230--Hb_001377_350 Hb_003544_050 Hb_003544_050 Hb_000809_230--Hb_003544_050 Hb_002749_060 Hb_002749_060 Hb_000809_230--Hb_002749_060 Hb_007994_010 Hb_007994_010 Hb_000809_230--Hb_007994_010 Hb_000809_230--Hb_009296_040 Hb_002414_050 Hb_002414_050 Hb_003544_160--Hb_002414_050 Hb_002768_060 Hb_002768_060 Hb_003544_160--Hb_002768_060 Hb_001662_100 Hb_001662_100 Hb_003544_160--Hb_001662_100 Hb_001876_010 Hb_001876_010 Hb_003544_160--Hb_001876_010 Hb_000359_210 Hb_000359_210 Hb_003544_160--Hb_000359_210 Hb_000140_210 Hb_000140_210 Hb_009296_040--Hb_000140_210 Hb_011016_050 Hb_011016_050 Hb_009296_040--Hb_011016_050 Hb_010142_020 Hb_010142_020 Hb_009296_040--Hb_010142_020 Hb_000028_390 Hb_000028_390 Hb_009296_040--Hb_000028_390 Hb_000537_050 Hb_000537_050 Hb_009296_040--Hb_000537_050 Hb_000614_240 Hb_000614_240 Hb_009296_040--Hb_000614_240 Hb_001377_350--Hb_002749_060 Hb_002890_130 Hb_002890_130 Hb_001377_350--Hb_002890_130 Hb_000261_480 Hb_000261_480 Hb_001377_350--Hb_000261_480 Hb_001377_350--Hb_003544_050 Hb_000003_100 Hb_000003_100 Hb_001377_350--Hb_000003_100 Hb_002830_010 Hb_002830_010 Hb_005582_040--Hb_002830_010 Hb_001304_110 Hb_001304_110 Hb_005582_040--Hb_001304_110 Hb_000640_040 Hb_000640_040 Hb_005582_040--Hb_000640_040 Hb_001716_040 Hb_001716_040 Hb_005582_040--Hb_001716_040 Hb_004030_080 Hb_004030_080 Hb_005582_040--Hb_004030_080 Hb_001635_120 Hb_001635_120 Hb_005582_040--Hb_001635_120 Hb_001279_030 Hb_001279_030 Hb_011228_010--Hb_001279_030 Hb_000039_150 Hb_000039_150 Hb_011228_010--Hb_000039_150 Hb_002027_080 Hb_002027_080 Hb_011228_010--Hb_002027_080 Hb_008959_010 Hb_008959_010 Hb_011228_010--Hb_008959_010 Hb_002055_040 Hb_002055_040 Hb_011228_010--Hb_002055_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.96552 8.82369 7.13164 12.5868 7.1673 10.3511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.19142 5.97312 9.53251 10.7791 15.4335

CAGE analysis