Hb_004679_040

Information

Type -
Description -
Location Contig4679: 49482-54704
Sequence    

Annotation

kegg
ID rcu:RCOM_0616150
description Rop guanine nucleotide exchange factor, putative
nr
ID XP_012084870.1
description PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
swissprot
ID Q93ZY2
description Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2
trembl
ID A0A067JT44
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20943 PE=4 SV=1
Gene Ontology
ID GO:0005089
description rop guanine nucleotide exchange factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44151: 49559-54585
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004679_040 0.0 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
2 Hb_091318_010 0.1050623483 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
3 Hb_001155_050 0.1196618366 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
4 Hb_054865_050 0.1225268253 - - calcium-dependent protein kinase, putative [Ricinus communis]
5 Hb_000000_480 0.1237764765 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
6 Hb_000757_130 0.1266951516 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002249_170 0.1275753448 - - copine, putative [Ricinus communis]
8 Hb_029253_010 0.1313205298 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
9 Hb_011671_340 0.1329305781 - - small GTPase [Hevea brasiliensis]
10 Hb_086639_050 0.1350822102 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
11 Hb_005064_070 0.1382730843 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
12 Hb_000922_320 0.1385890638 - - hypothetical protein B456_001G071400 [Gossypium raimondii]
13 Hb_002217_190 0.1396207049 - - invertase [Hevea brasiliensis]
14 Hb_001117_080 0.1414653275 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
15 Hb_000032_410 0.1415926716 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
16 Hb_001040_060 0.1416664674 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
17 Hb_001198_080 0.1419919978 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
18 Hb_001377_530 0.1441408626 - - NC domain-containing family protein [Populus trichocarpa]
19 Hb_002281_010 0.1461524401 - - hypothetical protein POPTR_0001s47550g [Populus trichocarpa]
20 Hb_001627_010 0.1465610333 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]

Gene co-expression network

sample Hb_004679_040 Hb_004679_040 Hb_091318_010 Hb_091318_010 Hb_004679_040--Hb_091318_010 Hb_001155_050 Hb_001155_050 Hb_004679_040--Hb_001155_050 Hb_054865_050 Hb_054865_050 Hb_004679_040--Hb_054865_050 Hb_000000_480 Hb_000000_480 Hb_004679_040--Hb_000000_480 Hb_000757_130 Hb_000757_130 Hb_004679_040--Hb_000757_130 Hb_002249_170 Hb_002249_170 Hb_004679_040--Hb_002249_170 Hb_029253_010 Hb_029253_010 Hb_091318_010--Hb_029253_010 Hb_000008_200 Hb_000008_200 Hb_091318_010--Hb_000008_200 Hb_005357_110 Hb_005357_110 Hb_091318_010--Hb_005357_110 Hb_000032_410 Hb_000032_410 Hb_091318_010--Hb_000032_410 Hb_000915_130 Hb_000915_130 Hb_091318_010--Hb_000915_130 Hb_011671_340 Hb_011671_340 Hb_001155_050--Hb_011671_340 Hb_015778_040 Hb_015778_040 Hb_001155_050--Hb_015778_040 Hb_007426_220 Hb_007426_220 Hb_001155_050--Hb_007426_220 Hb_000818_120 Hb_000818_120 Hb_001155_050--Hb_000818_120 Hb_000589_170 Hb_000589_170 Hb_001155_050--Hb_000589_170 Hb_001155_050--Hb_029253_010 Hb_009449_100 Hb_009449_100 Hb_054865_050--Hb_009449_100 Hb_005064_070 Hb_005064_070 Hb_054865_050--Hb_005064_070 Hb_054865_050--Hb_002249_170 Hb_000375_060 Hb_000375_060 Hb_054865_050--Hb_000375_060 Hb_001514_240 Hb_001514_240 Hb_054865_050--Hb_001514_240 Hb_000098_180 Hb_000098_180 Hb_054865_050--Hb_000098_180 Hb_004218_130 Hb_004218_130 Hb_000000_480--Hb_004218_130 Hb_012762_040 Hb_012762_040 Hb_000000_480--Hb_012762_040 Hb_000622_330 Hb_000622_330 Hb_000000_480--Hb_000622_330 Hb_000000_480--Hb_000098_180 Hb_000928_120 Hb_000928_120 Hb_000000_480--Hb_000928_120 Hb_000000_480--Hb_029253_010 Hb_000757_130--Hb_029253_010 Hb_000922_320 Hb_000922_320 Hb_000757_130--Hb_000922_320 Hb_000757_130--Hb_000589_170 Hb_000757_130--Hb_001155_050 Hb_002374_270 Hb_002374_270 Hb_000757_130--Hb_002374_270 Hb_001318_150 Hb_001318_150 Hb_002249_170--Hb_001318_150 Hb_003106_200 Hb_003106_200 Hb_002249_170--Hb_003106_200 Hb_011671_110 Hb_011671_110 Hb_002249_170--Hb_011671_110 Hb_086639_050 Hb_086639_050 Hb_002249_170--Hb_086639_050 Hb_001247_210 Hb_001247_210 Hb_002249_170--Hb_001247_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.457497 7.84607 18.0066 11.2024 0.750547 0.563822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.06345 1.59331 1.53051 3.50315 5.3763

CAGE analysis