Hb_004679_050

Information

Type -
Description -
Location Contig4679: 77009-85049
Sequence    

Annotation

kegg
ID rcu:RCOM_1108220
description galactono-1,4-lactone dehydrogenase, putative (EC:1.1.3.8)
nr
ID XP_002531501.1
description galactono-1,4-lactone dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9SU56
description L-galactono-1,4-lactone dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=GLDH PE=1 SV=1
trembl
ID B9SZT2
description Galactono-1,4-lactone dehydrogenase, putative OS=Ricinus communis GN=RCOM_1108220 PE=4 SV=1
Gene Ontology
ID GO:0016020
description l-galactono- -lactone mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44152: 80002-85134 , PASA_asmbl_44153: 77009-85241
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004679_050 0.0 - - galactono-1,4-lactone dehydrogenase, putative [Ricinus communis]
2 Hb_056753_010 0.0799100614 - - PREDICTED: L-galactono-1,4-lactone dehydrogenase, mitochondrial isoform X2 [Jatropha curcas]
3 Hb_005098_030 0.0960698734 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
4 Hb_000731_260 0.1059190601 - - hypothetical protein RCOM_0905090 [Ricinus communis]
5 Hb_008616_070 0.1113280382 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
6 Hb_011671_450 0.1136911788 - - -
7 Hb_002799_040 0.1149608384 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Vitis vinifera]
8 Hb_000108_070 0.1189868129 - - alpha-tubulin 1 [Hevea brasiliensis]
9 Hb_003462_120 0.1209147792 - - Acidic endochitinase [Theobroma cacao]
10 Hb_001507_040 0.1223286419 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000934_190 0.1251094478 - - SER/ARG-rich protein 34A [Theobroma cacao]
12 Hb_001504_330 0.125502142 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
13 Hb_004079_030 0.1316645679 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
14 Hb_015778_010 0.1330273794 - - PREDICTED: AMSH-like ubiquitin thioesterase 1 [Jatropha curcas]
15 Hb_000922_390 0.134288199 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
16 Hb_002027_040 0.1351604233 - - synapse-associated protein, putative [Ricinus communis]
17 Hb_002411_050 0.1360127732 - - PREDICTED: cytochrome P450 4X1-like isoform X1 [Jatropha curcas]
18 Hb_004705_120 0.1367507447 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000165_160 0.1367869032 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
20 Hb_002660_070 0.1383413238 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]

Gene co-expression network

sample Hb_004679_050 Hb_004679_050 Hb_056753_010 Hb_056753_010 Hb_004679_050--Hb_056753_010 Hb_005098_030 Hb_005098_030 Hb_004679_050--Hb_005098_030 Hb_000731_260 Hb_000731_260 Hb_004679_050--Hb_000731_260 Hb_008616_070 Hb_008616_070 Hb_004679_050--Hb_008616_070 Hb_011671_450 Hb_011671_450 Hb_004679_050--Hb_011671_450 Hb_002799_040 Hb_002799_040 Hb_004679_050--Hb_002799_040 Hb_000789_220 Hb_000789_220 Hb_056753_010--Hb_000789_220 Hb_001507_040 Hb_001507_040 Hb_056753_010--Hb_001507_040 Hb_002411_050 Hb_002411_050 Hb_056753_010--Hb_002411_050 Hb_056753_010--Hb_002799_040 Hb_056753_010--Hb_000731_260 Hb_000934_190 Hb_000934_190 Hb_005098_030--Hb_000934_190 Hb_005098_030--Hb_011671_450 Hb_002119_130 Hb_002119_130 Hb_005098_030--Hb_002119_130 Hb_017131_010 Hb_017131_010 Hb_005098_030--Hb_017131_010 Hb_003622_040 Hb_003622_040 Hb_005098_030--Hb_003622_040 Hb_004705_120 Hb_004705_120 Hb_000731_260--Hb_004705_120 Hb_000108_070 Hb_000108_070 Hb_000731_260--Hb_000108_070 Hb_001080_280 Hb_001080_280 Hb_000731_260--Hb_001080_280 Hb_000521_130 Hb_000521_130 Hb_000731_260--Hb_000521_130 Hb_148113_010 Hb_148113_010 Hb_000731_260--Hb_148113_010 Hb_008616_070--Hb_001507_040 Hb_002660_070 Hb_002660_070 Hb_008616_070--Hb_002660_070 Hb_020805_130 Hb_020805_130 Hb_008616_070--Hb_020805_130 Hb_008616_070--Hb_004705_120 Hb_001904_090 Hb_001904_090 Hb_008616_070--Hb_001904_090 Hb_015778_010 Hb_015778_010 Hb_008616_070--Hb_015778_010 Hb_000922_390 Hb_000922_390 Hb_011671_450--Hb_000922_390 Hb_011671_460 Hb_011671_460 Hb_011671_450--Hb_011671_460 Hb_000820_090 Hb_000820_090 Hb_011671_450--Hb_000820_090 Hb_001811_030 Hb_001811_030 Hb_011671_450--Hb_001811_030 Hb_001504_330 Hb_001504_330 Hb_002799_040--Hb_001504_330 Hb_000393_020 Hb_000393_020 Hb_002799_040--Hb_000393_020 Hb_031910_020 Hb_031910_020 Hb_002799_040--Hb_031910_020 Hb_002799_040--Hb_002119_130 Hb_002799_040--Hb_001507_040 Hb_000603_080 Hb_000603_080 Hb_002799_040--Hb_000603_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.68438 8.82273 9.21734 16.0995 5.51874 6.71438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.5932 14.3584 44.9469 15.1651 14.0586

CAGE analysis