Hb_004680_010

Information

Type -
Description -
Location Contig4680: 38779-42801
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23020g
description POPTRDRAFT_561511; hypothetical protein
nr
ID XP_012074864.1
description PREDICTED: uncharacterized protein LOC105636246 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KH60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09014 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44161: 38782-39272
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004680_010 0.0 - - PREDICTED: uncharacterized protein LOC105636246 isoform X1 [Jatropha curcas]
2 Hb_016734_010 0.0602316294 - - PREDICTED: probable DNA-3-methyladenine glycosylase 2 [Jatropha curcas]
3 Hb_000735_080 0.0762323421 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
4 Hb_000111_370 0.1032076796 - - PREDICTED: cation/H(+) antiporter 2-like [Jatropha curcas]
5 Hb_013726_050 0.1039613802 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
6 Hb_002304_050 0.1102477987 - - pyruvate kinase, putative [Ricinus communis]
7 Hb_002445_030 0.1107564138 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
8 Hb_004375_110 0.1134878421 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
9 Hb_009372_020 0.113769417 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
10 Hb_001956_060 0.1190660015 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
11 Hb_005741_040 0.1211927324 - - PREDICTED: probable receptor-like protein kinase At1g49730 [Jatropha curcas]
12 Hb_000015_200 0.1219395808 - - PREDICTED: LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein 2-like [Jatropha curcas]
13 Hb_000012_240 0.1240896649 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
14 Hb_000452_030 0.1252135105 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
15 Hb_018845_010 0.1262881486 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
16 Hb_000173_130 0.1268209201 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
17 Hb_004994_180 0.1283691821 - - malic enzyme, putative [Ricinus communis]
18 Hb_000197_180 0.1294816338 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
19 Hb_002739_120 0.1311249484 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
20 Hb_000243_260 0.1313661187 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004680_010 Hb_004680_010 Hb_016734_010 Hb_016734_010 Hb_004680_010--Hb_016734_010 Hb_000735_080 Hb_000735_080 Hb_004680_010--Hb_000735_080 Hb_000111_370 Hb_000111_370 Hb_004680_010--Hb_000111_370 Hb_013726_050 Hb_013726_050 Hb_004680_010--Hb_013726_050 Hb_002304_050 Hb_002304_050 Hb_004680_010--Hb_002304_050 Hb_002445_030 Hb_002445_030 Hb_004680_010--Hb_002445_030 Hb_006683_020 Hb_006683_020 Hb_016734_010--Hb_006683_020 Hb_000173_130 Hb_000173_130 Hb_016734_010--Hb_000173_130 Hb_016734_010--Hb_002445_030 Hb_009372_020 Hb_009372_020 Hb_016734_010--Hb_009372_020 Hb_027760_060 Hb_027760_060 Hb_016734_010--Hb_027760_060 Hb_000735_080--Hb_016734_010 Hb_000735_140 Hb_000735_140 Hb_000735_080--Hb_000735_140 Hb_000203_270 Hb_000203_270 Hb_000735_080--Hb_000203_270 Hb_000735_080--Hb_002304_050 Hb_000012_240 Hb_000012_240 Hb_000735_080--Hb_000012_240 Hb_000111_370--Hb_009372_020 Hb_033363_010 Hb_033363_010 Hb_000111_370--Hb_033363_010 Hb_000015_200 Hb_000015_200 Hb_000111_370--Hb_000015_200 Hb_004375_110 Hb_004375_110 Hb_000111_370--Hb_004375_110 Hb_003964_110 Hb_003964_110 Hb_000111_370--Hb_003964_110 Hb_002272_240 Hb_002272_240 Hb_013726_050--Hb_002272_240 Hb_013726_050--Hb_002304_050 Hb_005741_040 Hb_005741_040 Hb_013726_050--Hb_005741_040 Hb_002687_180 Hb_002687_180 Hb_013726_050--Hb_002687_180 Hb_013726_050--Hb_002445_030 Hb_116349_120 Hb_116349_120 Hb_013726_050--Hb_116349_120 Hb_000753_160 Hb_000753_160 Hb_002304_050--Hb_000753_160 Hb_002304_050--Hb_002687_180 Hb_003449_100 Hb_003449_100 Hb_002304_050--Hb_003449_100 Hb_001250_050 Hb_001250_050 Hb_002304_050--Hb_001250_050 Hb_002304_050--Hb_002272_240 Hb_002445_030--Hb_000173_130 Hb_006438_020 Hb_006438_020 Hb_002445_030--Hb_006438_020 Hb_008289_040 Hb_008289_040 Hb_002445_030--Hb_008289_040 Hb_002552_040 Hb_002552_040 Hb_002445_030--Hb_002552_040 Hb_002445_030--Hb_002687_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.591793 2.78693 3.06381 3.90384 0.688103 0.484044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.361195 0.940166 1.75781 2.39724 2.0074

CAGE analysis