Hb_004680_030

Information

Type -
Description -
Location Contig4680: 79704-81040
Sequence    

Annotation

kegg
ID sly:104647474
description uncharacterized LOC104647474
nr
ID XP_012480974.1
description PREDICTED: uncharacterized protein LOC105795864 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0P5S7
description Uncharacterized protein OS=Gossypium arboreum GN=F383_28234 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44167: 73753-92289
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004680_030 0.0 - - PREDICTED: uncharacterized protein LOC105795864 [Gossypium raimondii]
2 Hb_012399_010 0.1270469082 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_008835_010 0.164596361 - - PREDICTED: uncharacterized protein LOC105851721 [Cicer arietinum]
4 Hb_150851_010 0.1773238254 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_000038_190 0.2177948771 - - -
6 Hb_000046_150 0.2177948771 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_000047_120 0.2177948771 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000062_120 0.2177948771 - - hypothetical protein JCGZ_17895 [Jatropha curcas]
9 Hb_000094_140 0.2177948771 - - hypothetical protein POPTR_0007s09865g [Populus trichocarpa]
10 Hb_000100_080 0.2177948771 - - -
11 Hb_000120_830 0.2177948771 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
12 Hb_000134_060 0.2177948771 - - PREDICTED: LOW QUALITY PROTEIN: extended synaptotagmin-1-like [Jatropha curcas]
13 Hb_000173_450 0.2177948771 - - -
14 Hb_000175_170 0.2177948771 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
15 Hb_000181_170 0.2177948771 - - hypothetical protein POPTR_0011s11750g [Populus trichocarpa]
16 Hb_000298_040 0.2177948771 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_000313_270 0.2177948771 - - PREDICTED: uncharacterized protein LOC105761822 [Gossypium raimondii]
18 Hb_000327_090 0.2177948771 - - PREDICTED: uncharacterized protein LOC102627976 [Citrus sinensis]
19 Hb_000421_080 0.2177948771 - - -
20 Hb_000453_200 0.2177948771 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105113357 [Populus euphratica]

Gene co-expression network

sample Hb_004680_030 Hb_004680_030 Hb_012399_010 Hb_012399_010 Hb_004680_030--Hb_012399_010 Hb_008835_010 Hb_008835_010 Hb_004680_030--Hb_008835_010 Hb_150851_010 Hb_150851_010 Hb_004680_030--Hb_150851_010 Hb_000038_190 Hb_000038_190 Hb_004680_030--Hb_000038_190 Hb_000046_150 Hb_000046_150 Hb_004680_030--Hb_000046_150 Hb_000047_120 Hb_000047_120 Hb_004680_030--Hb_000047_120 Hb_012399_010--Hb_008835_010 Hb_012399_010--Hb_150851_010 Hb_000061_280 Hb_000061_280 Hb_012399_010--Hb_000061_280 Hb_003025_070 Hb_003025_070 Hb_012399_010--Hb_003025_070 Hb_021419_050 Hb_021419_050 Hb_012399_010--Hb_021419_050 Hb_008835_010--Hb_150851_010 Hb_008835_010--Hb_000061_280 Hb_008835_010--Hb_003025_070 Hb_001545_190 Hb_001545_190 Hb_008835_010--Hb_001545_190 Hb_150851_010--Hb_000061_280 Hb_150851_010--Hb_003025_070 Hb_150851_010--Hb_001545_190 Hb_000038_190--Hb_000046_150 Hb_000038_190--Hb_000047_120 Hb_000062_120 Hb_000062_120 Hb_000038_190--Hb_000062_120 Hb_000094_140 Hb_000094_140 Hb_000038_190--Hb_000094_140 Hb_000100_080 Hb_000100_080 Hb_000038_190--Hb_000100_080 Hb_000120_830 Hb_000120_830 Hb_000038_190--Hb_000120_830 Hb_000038_190--Hb_000046_150 Hb_000038_190--Hb_000047_120 Hb_000038_190--Hb_000062_120 Hb_000038_190--Hb_000094_140 Hb_000038_190--Hb_000100_080 Hb_000038_190--Hb_000120_830 Hb_000038_190--Hb_000046_150 Hb_000038_190--Hb_000047_120 Hb_000038_190--Hb_000062_120 Hb_000038_190--Hb_000094_140 Hb_000038_190--Hb_000100_080 Hb_000038_190--Hb_000120_830
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0225623 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.223509 0 0

CAGE analysis