Hb_004680_080

Information

Type -
Description -
Location Contig4680: 164378-165989
Sequence    

Annotation

kegg
ID rcu:RCOM_0115810
description chloroplast-targeted copper chaperone, putative
nr
ID XP_002534052.1
description chloroplast-targeted copper chaperone, putative [Ricinus communis]
swissprot
ID Q94BT9
description Copper transport protein ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=1
trembl
ID B9T733
description Chloroplast-targeted copper chaperone, putative OS=Ricinus communis GN=RCOM_0115810 PE=4 SV=1
Gene Ontology
ID GO:0044707
description chloroplast-targeted copper

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44169: 164300-164568 , PASA_asmbl_44170: 165171-165600
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004680_080 0.0 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
2 Hb_006132_070 0.1730022587 - - phosphate transporter [Manihot esculenta]
3 Hb_008062_040 0.1842870256 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
4 Hb_001085_050 0.1871291317 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
5 Hb_000005_180 0.1907742836 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002836_120 0.1979643384 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 [Populus euphratica]
7 Hb_000575_030 0.1987646461 - - unnamed protein product [Vitis vinifera]
8 Hb_011380_020 0.2120640894 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X4 [Populus euphratica]
9 Hb_000390_110 0.2197928204 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
10 Hb_000228_090 0.2201150174 - - PREDICTED: protein PAM68, chloroplastic [Jatropha curcas]
11 Hb_000008_360 0.2242680704 - - hypothetical protein POPTR_0004s22050g [Populus trichocarpa]
12 Hb_002701_110 0.2269244488 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1-like [Jatropha curcas]
13 Hb_000072_070 0.2298855849 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl diphosphate synthase [Hevea brasiliensis]
14 Hb_029695_110 0.2321863804 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
15 Hb_010367_030 0.2328896095 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005433_010 0.2340670938 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
17 Hb_012545_060 0.2346911677 - - PREDICTED: uncharacterized protein LOC103986927 [Musa acuminata subsp. malaccensis]
18 Hb_001328_030 0.2347946121 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
19 Hb_004586_430 0.2378989927 - - PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
20 Hb_002701_120 0.2383829075 - - PREDICTED: uncharacterized protein LOC105646751 [Jatropha curcas]

Gene co-expression network

sample Hb_004680_080 Hb_004680_080 Hb_006132_070 Hb_006132_070 Hb_004680_080--Hb_006132_070 Hb_008062_040 Hb_008062_040 Hb_004680_080--Hb_008062_040 Hb_001085_050 Hb_001085_050 Hb_004680_080--Hb_001085_050 Hb_000005_180 Hb_000005_180 Hb_004680_080--Hb_000005_180 Hb_002836_120 Hb_002836_120 Hb_004680_080--Hb_002836_120 Hb_000575_030 Hb_000575_030 Hb_004680_080--Hb_000575_030 Hb_005433_010 Hb_005433_010 Hb_006132_070--Hb_005433_010 Hb_006132_070--Hb_001085_050 Hb_001401_080 Hb_001401_080 Hb_006132_070--Hb_001401_080 Hb_029695_110 Hb_029695_110 Hb_006132_070--Hb_029695_110 Hb_000243_200 Hb_000243_200 Hb_006132_070--Hb_000243_200 Hb_000072_070 Hb_000072_070 Hb_006132_070--Hb_000072_070 Hb_008062_040--Hb_001085_050 Hb_008062_040--Hb_000575_030 Hb_008062_040--Hb_000072_070 Hb_000317_490 Hb_000317_490 Hb_008062_040--Hb_000317_490 Hb_011316_100 Hb_011316_100 Hb_008062_040--Hb_011316_100 Hb_000331_250 Hb_000331_250 Hb_008062_040--Hb_000331_250 Hb_001085_050--Hb_000072_070 Hb_000003_600 Hb_000003_600 Hb_001085_050--Hb_000003_600 Hb_007313_090 Hb_007313_090 Hb_001085_050--Hb_007313_090 Hb_001085_050--Hb_000575_030 Hb_003638_130 Hb_003638_130 Hb_001085_050--Hb_003638_130 Hb_000005_180--Hb_002836_120 Hb_001488_030 Hb_001488_030 Hb_000005_180--Hb_001488_030 Hb_001329_090 Hb_001329_090 Hb_000005_180--Hb_001329_090 Hb_169116_010 Hb_169116_010 Hb_000005_180--Hb_169116_010 Hb_003077_150 Hb_003077_150 Hb_000005_180--Hb_003077_150 Hb_000442_040 Hb_000442_040 Hb_000005_180--Hb_000442_040 Hb_002836_120--Hb_001488_030 Hb_000008_360 Hb_000008_360 Hb_002836_120--Hb_000008_360 Hb_000390_110 Hb_000390_110 Hb_002836_120--Hb_000390_110 Hb_002836_120--Hb_001329_090 Hb_002836_120--Hb_169116_010 Hb_003607_050 Hb_003607_050 Hb_000575_030--Hb_003607_050 Hb_000575_030--Hb_000072_070 Hb_000575_030--Hb_000317_490 Hb_004195_270 Hb_004195_270 Hb_000575_030--Hb_004195_270 Hb_000575_030--Hb_011316_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8236 1.15943 11.691 4.26089 2.48412 2.69446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0494 3.86541 1.37395 0.200743 9.83904

CAGE analysis