Hb_004684_010

Information

Type -
Description -
Location Contig4684: 20881-29452
Sequence    

Annotation

kegg
ID pop:POPTR_0006s04240g
description POPTRDRAFT_560432; patatin-related family protein
nr
ID XP_012085968.1
description PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
swissprot
ID Q9LZA6
description Triacylglycerol lipase SDP1 OS=Arabidopsis thaliana GN=SDP1 PE=1 SV=1
trembl
ID B9H971
description Patatin-related family protein OS=Populus trichocarpa GN=POPTR_0006s04240g PE=4 SV=1
Gene Ontology
ID GO:0006629
description triacylglycerol lipase sdp1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44176: 20988-26634
cDNA
(Sanger)
(ID:Location)		 024_C17.ab1: 25609-26541

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004684_010 0.0 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
2 Hb_007416_180 0.0598468397 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
3 Hb_002311_040 0.0667236286 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
4 Hb_003464_060 0.06814206 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
5 Hb_000768_040 0.069116754 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
6 Hb_015807_070 0.0693297985 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
7 Hb_004724_060 0.0703284616 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
8 Hb_001507_020 0.0729461448 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
9 Hb_002835_370 0.0753323172 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
10 Hb_008500_010 0.075447844 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
11 Hb_000453_170 0.0756727888 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_003211_020 0.076814452 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Jatropha curcas]
13 Hb_002110_150 0.0772463095 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
14 Hb_006316_040 0.0798954253 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
15 Hb_002496_030 0.0799385858 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
16 Hb_001021_170 0.0807947642 - - PREDICTED: uncharacterized protein LOC105642474 [Jatropha curcas]
17 Hb_004837_040 0.0810244414 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
18 Hb_000291_050 0.0811044232 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
19 Hb_005348_140 0.0821519535 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]
20 Hb_000030_300 0.0827305608 - - Thioredoxin, putative [Ricinus communis]

Gene co-expression network

sample Hb_004684_010 Hb_004684_010 Hb_007416_180 Hb_007416_180 Hb_004684_010--Hb_007416_180 Hb_002311_040 Hb_002311_040 Hb_004684_010--Hb_002311_040 Hb_003464_060 Hb_003464_060 Hb_004684_010--Hb_003464_060 Hb_000768_040 Hb_000768_040 Hb_004684_010--Hb_000768_040 Hb_015807_070 Hb_015807_070 Hb_004684_010--Hb_015807_070 Hb_004724_060 Hb_004724_060 Hb_004684_010--Hb_004724_060 Hb_000538_270 Hb_000538_270 Hb_007416_180--Hb_000538_270 Hb_031527_040 Hb_031527_040 Hb_007416_180--Hb_031527_040 Hb_000181_070 Hb_000181_070 Hb_007416_180--Hb_000181_070 Hb_001248_060 Hb_001248_060 Hb_007416_180--Hb_001248_060 Hb_001409_020 Hb_001409_020 Hb_007416_180--Hb_001409_020 Hb_000723_130 Hb_000723_130 Hb_002311_040--Hb_000723_130 Hb_002942_100 Hb_002942_100 Hb_002311_040--Hb_002942_100 Hb_009486_200 Hb_009486_200 Hb_002311_040--Hb_009486_200 Hb_008500_010 Hb_008500_010 Hb_002311_040--Hb_008500_010 Hb_001198_100 Hb_001198_100 Hb_002311_040--Hb_001198_100 Hb_003464_060--Hb_000768_040 Hb_000030_300 Hb_000030_300 Hb_003464_060--Hb_000030_300 Hb_002016_110 Hb_002016_110 Hb_003464_060--Hb_002016_110 Hb_004907_110 Hb_004907_110 Hb_003464_060--Hb_004907_110 Hb_002026_180 Hb_002026_180 Hb_003464_060--Hb_002026_180 Hb_002603_120 Hb_002603_120 Hb_000768_040--Hb_002603_120 Hb_001021_170 Hb_001021_170 Hb_000768_040--Hb_001021_170 Hb_001226_030 Hb_001226_030 Hb_000768_040--Hb_001226_030 Hb_004355_020 Hb_004355_020 Hb_000768_040--Hb_004355_020 Hb_000174_220 Hb_000174_220 Hb_015807_070--Hb_000174_220 Hb_015807_070--Hb_001021_170 Hb_015807_070--Hb_007416_180 Hb_015807_070--Hb_008500_010 Hb_011491_010 Hb_011491_010 Hb_015807_070--Hb_011491_010 Hb_001797_050 Hb_001797_050 Hb_004724_060--Hb_001797_050 Hb_000577_010 Hb_000577_010 Hb_004724_060--Hb_000577_010 Hb_007163_090 Hb_007163_090 Hb_004724_060--Hb_007163_090 Hb_000820_170 Hb_000820_170 Hb_004724_060--Hb_000820_170 Hb_004724_060--Hb_008500_010 Hb_123352_020 Hb_123352_020 Hb_004724_060--Hb_123352_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5082 12.5017 6.75054 5.38116 9.99028 14.8398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5652 10.1719 17.2092 7.95567 7.86048

CAGE analysis