Hb_004690_040

Information

Type -
Description -
Location Contig4690: 56187-66643
Sequence    

Annotation

kegg
ID pmum:103336499
description pentatricopeptide repeat-containing protein At1g71420
nr
ID XP_012076873.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g71420 [Jatropha curcas]
swissprot
ID Q9C9H9
description Pentatricopeptide repeat-containing protein At1g71420 OS=Arabidopsis thaliana GN=PCMP-H70 PE=2 SV=1
trembl
ID M5VWP7
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016573mg PE=4 SV=1
Gene Ontology
ID GO:0016787
description pentatricopeptide repeat-containing protein at1g71420

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004690_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420 [Jatropha curcas]
2 Hb_000107_420 0.1235466102 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
3 Hb_004846_070 0.1242351398 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
4 Hb_001898_070 0.130070205 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16610 [Jatropha curcas]
5 Hb_002918_180 0.1313562992 - - hypothetical protein POPTR_0004s04740g [Populus trichocarpa]
6 Hb_011716_030 0.1315369638 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Populus euphratica]
7 Hb_004374_070 0.1344553357 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
8 Hb_000206_240 0.1346012351 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005188_020 0.1359796611 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
10 Hb_080952_010 0.1381566683 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20770 [Jatropha curcas]
11 Hb_002316_150 0.1411492763 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
12 Hb_001969_110 0.1491053961 - - PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic [Jatropha curcas]
13 Hb_007441_220 0.1508286415 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
14 Hb_000002_050 0.1521490338 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
15 Hb_002235_040 0.1529800373 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
16 Hb_001085_060 0.1537046913 - - PREDICTED: pentatricopeptide repeat-containing protein At1g04840 [Jatropha curcas]
17 Hb_000603_110 0.1571279272 - - copper transporter, putative [Ricinus communis]
18 Hb_007483_100 0.1581102732 - - hypothetical protein POPTR_0001s34330g [Populus trichocarpa]
19 Hb_000204_210 0.1588213773 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
20 Hb_006718_020 0.1589902054 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004690_040 Hb_004690_040 Hb_000107_420 Hb_000107_420 Hb_004690_040--Hb_000107_420 Hb_004846_070 Hb_004846_070 Hb_004690_040--Hb_004846_070 Hb_001898_070 Hb_001898_070 Hb_004690_040--Hb_001898_070 Hb_002918_180 Hb_002918_180 Hb_004690_040--Hb_002918_180 Hb_011716_030 Hb_011716_030 Hb_004690_040--Hb_011716_030 Hb_004374_070 Hb_004374_070 Hb_004690_040--Hb_004374_070 Hb_000206_240 Hb_000206_240 Hb_000107_420--Hb_000206_240 Hb_001085_060 Hb_001085_060 Hb_000107_420--Hb_001085_060 Hb_007441_220 Hb_007441_220 Hb_000107_420--Hb_007441_220 Hb_000107_420--Hb_004374_070 Hb_002276_130 Hb_002276_130 Hb_000107_420--Hb_002276_130 Hb_000204_210 Hb_000204_210 Hb_000107_420--Hb_000204_210 Hb_004846_070--Hb_000206_240 Hb_001090_050 Hb_001090_050 Hb_004846_070--Hb_001090_050 Hb_013607_040 Hb_013607_040 Hb_004846_070--Hb_013607_040 Hb_000002_050 Hb_000002_050 Hb_004846_070--Hb_000002_050 Hb_002307_170 Hb_002307_170 Hb_004846_070--Hb_002307_170 Hb_008695_100 Hb_008695_100 Hb_004846_070--Hb_008695_100 Hb_001898_070--Hb_002307_170 Hb_001898_070--Hb_004846_070 Hb_001898_070--Hb_000002_050 Hb_002585_020 Hb_002585_020 Hb_001898_070--Hb_002585_020 Hb_000340_390 Hb_000340_390 Hb_001898_070--Hb_000340_390 Hb_001454_190 Hb_001454_190 Hb_001898_070--Hb_001454_190 Hb_002235_040 Hb_002235_040 Hb_002918_180--Hb_002235_040 Hb_002316_150 Hb_002316_150 Hb_002918_180--Hb_002316_150 Hb_000866_120 Hb_000866_120 Hb_002918_180--Hb_000866_120 Hb_029142_050 Hb_029142_050 Hb_002918_180--Hb_029142_050 Hb_001999_090 Hb_001999_090 Hb_002918_180--Hb_001999_090 Hb_022250_090 Hb_022250_090 Hb_002918_180--Hb_022250_090 Hb_011716_030--Hb_000204_210 Hb_011716_030--Hb_000107_420 Hb_168697_010 Hb_168697_010 Hb_011716_030--Hb_168697_010 Hb_000270_670 Hb_000270_670 Hb_011716_030--Hb_000270_670 Hb_009486_200 Hb_009486_200 Hb_011716_030--Hb_009486_200 Hb_011716_030--Hb_000206_240 Hb_000056_240 Hb_000056_240 Hb_004374_070--Hb_000056_240 Hb_000041_100 Hb_000041_100 Hb_004374_070--Hb_000041_100 Hb_003371_090 Hb_003371_090 Hb_004374_070--Hb_003371_090 Hb_000866_220 Hb_000866_220 Hb_004374_070--Hb_000866_220 Hb_007483_100 Hb_007483_100 Hb_004374_070--Hb_007483_100 Hb_002725_120 Hb_002725_120 Hb_004374_070--Hb_002725_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.135031 0.358073 0.0513194 0.0877191 0.127061 0.241693
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0777583 0.314707 0.553888 0.145437 0.299636

CAGE analysis