Hb_004691_040

Information

Type -
Description -
Location Contig4691: 102448-107853
Sequence    

Annotation

kegg
ID brp:103833451
description cold shock protein 1-like
nr
ID XP_012453109.1
description PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NIH9
description Gag-Pol polyprotein OS=Gossypium arboreum GN=F383_19136 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004691_040 0.0 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
2 Hb_004116_110 0.1463586954 - - hypothetical protein MTR_3g064100 [Medicago truncatula]
3 Hb_035905_010 0.1599507672 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
4 Hb_015675_060 0.2062973591 - - -
5 Hb_002742_010 0.2217277558 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
6 Hb_000373_300 0.2250420686 - - hypothetical protein F775_20382 [Aegilops tauschii]
7 Hb_004055_060 0.2260564035 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
8 Hb_048197_010 0.2317086449 - - -
9 Hb_007713_010 0.2348820996 - - hypothetical protein JCGZ_18011 [Jatropha curcas]
10 Hb_151930_020 0.2418949121 - - Wound-induced protein WIN1 precursor, putative [Ricinus communis]
11 Hb_003209_030 0.2451553707 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
12 Hb_007477_090 0.2499512037 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
13 Hb_001821_120 0.2528224265 - - PREDICTED: uncharacterized protein LOC105643956 [Jatropha curcas]
14 Hb_003963_020 0.2544538331 - - PREDICTED: uncharacterized protein LOC100256672 [Vitis vinifera]
15 Hb_001141_400 0.2581838304 - - hypothetical protein B456_007G2854002, partial [Gossypium raimondii]
16 Hb_003023_050 0.2612967961 - - hypothetical protein POPTR_0013s10320g [Populus trichocarpa]
17 Hb_001143_010 0.2672483949 - - -
18 Hb_001279_250 0.267838546 - - PREDICTED: pectate lyase-like [Jatropha curcas]
19 Hb_001959_300 0.269287576 - - PREDICTED: 3-isopropylmalate dehydratase large subunit [Jatropha curcas]
20 Hb_188382_010 0.269758857 - - Ran GTPase binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004691_040 Hb_004691_040 Hb_004116_110 Hb_004116_110 Hb_004691_040--Hb_004116_110 Hb_035905_010 Hb_035905_010 Hb_004691_040--Hb_035905_010 Hb_015675_060 Hb_015675_060 Hb_004691_040--Hb_015675_060 Hb_002742_010 Hb_002742_010 Hb_004691_040--Hb_002742_010 Hb_000373_300 Hb_000373_300 Hb_004691_040--Hb_000373_300 Hb_004055_060 Hb_004055_060 Hb_004691_040--Hb_004055_060 Hb_004116_110--Hb_015675_060 Hb_048197_010 Hb_048197_010 Hb_004116_110--Hb_048197_010 Hb_174107_010 Hb_174107_010 Hb_004116_110--Hb_174107_010 Hb_188382_010 Hb_188382_010 Hb_004116_110--Hb_188382_010 Hb_004116_110--Hb_002742_010 Hb_000260_450 Hb_000260_450 Hb_035905_010--Hb_000260_450 Hb_003992_120 Hb_003992_120 Hb_035905_010--Hb_003992_120 Hb_035905_010--Hb_004116_110 Hb_001141_400 Hb_001141_400 Hb_035905_010--Hb_001141_400 Hb_000061_350 Hb_000061_350 Hb_035905_010--Hb_000061_350 Hb_015675_060--Hb_188382_010 Hb_142522_010 Hb_142522_010 Hb_015675_060--Hb_142522_010 Hb_029982_010 Hb_029982_010 Hb_015675_060--Hb_029982_010 Hb_015675_060--Hb_002742_010 Hb_002742_010--Hb_001141_400 Hb_000329_530 Hb_000329_530 Hb_002742_010--Hb_000329_530 Hb_002742_010--Hb_188382_010 Hb_002742_010--Hb_000373_300 Hb_028365_010 Hb_028365_010 Hb_002742_010--Hb_028365_010 Hb_003023_050 Hb_003023_050 Hb_002742_010--Hb_003023_050 Hb_000373_300--Hb_001141_400 Hb_002741_030 Hb_002741_030 Hb_000373_300--Hb_002741_030 Hb_000861_050 Hb_000861_050 Hb_000373_300--Hb_000861_050 Hb_001143_010 Hb_001143_010 Hb_000373_300--Hb_001143_010 Hb_159085_010 Hb_159085_010 Hb_000373_300--Hb_159085_010 Hb_004055_060--Hb_003023_050 Hb_001279_250 Hb_001279_250 Hb_004055_060--Hb_001279_250 Hb_000052_010 Hb_000052_010 Hb_004055_060--Hb_000052_010 Hb_000580_160 Hb_000580_160 Hb_004055_060--Hb_000580_160 Hb_010166_020 Hb_010166_020 Hb_004055_060--Hb_010166_020 Hb_002492_020 Hb_002492_020 Hb_004055_060--Hb_002492_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0198832 0 0 0 0.0149579 0.0140195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0364296 0.0573157 0 0.0114618 0

CAGE analysis