Hb_004696_080

Information

Type -
Description -
Location Contig4696: 58441-61901
Sequence    

Annotation

kegg
ID pop:POPTR_0009s11860g
description POPTRDRAFT_722038; hypothetical protein
nr
ID XP_011048562.1
description PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
swissprot
ID Q8GUH2
description Uncharacterized protein At1g01500 OS=Arabidopsis thaliana GN=At1g01500 PE=2 SV=1
trembl
ID B9HRN5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s11860g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44194: 58902-59651 , PASA_asmbl_44195: 61222-61381
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004696_080 0.0 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
2 Hb_024439_010 0.0681834467 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
3 Hb_000638_250 0.0692365947 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_152784_010 0.0713508837 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]
5 Hb_000805_240 0.0730004498 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
6 Hb_148121_040 0.0742814302 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
7 Hb_000291_080 0.0757465568 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
8 Hb_000703_350 0.0767118147 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
9 Hb_003605_090 0.077724815 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
10 Hb_003697_040 0.0779986262 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
11 Hb_000477_060 0.0792078849 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
12 Hb_001799_210 0.0798047844 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
13 Hb_000329_110 0.0801608818 - - PREDICTED: uncharacterized protein LOC105643142 [Jatropha curcas]
14 Hb_004078_040 0.0801809534 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
15 Hb_000331_200 0.0811808063 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
16 Hb_000465_160 0.081548266 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
17 Hb_001300_150 0.0826234355 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
18 Hb_000403_060 0.0834448122 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
19 Hb_000363_360 0.083635639 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
20 Hb_004889_010 0.0841096105 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]

Gene co-expression network

sample Hb_004696_080 Hb_004696_080 Hb_024439_010 Hb_024439_010 Hb_004696_080--Hb_024439_010 Hb_000638_250 Hb_000638_250 Hb_004696_080--Hb_000638_250 Hb_152784_010 Hb_152784_010 Hb_004696_080--Hb_152784_010 Hb_000805_240 Hb_000805_240 Hb_004696_080--Hb_000805_240 Hb_148121_040 Hb_148121_040 Hb_004696_080--Hb_148121_040 Hb_000291_080 Hb_000291_080 Hb_004696_080--Hb_000291_080 Hb_000390_300 Hb_000390_300 Hb_024439_010--Hb_000390_300 Hb_017895_040 Hb_017895_040 Hb_024439_010--Hb_017895_040 Hb_004058_030 Hb_004058_030 Hb_024439_010--Hb_004058_030 Hb_004102_110 Hb_004102_110 Hb_024439_010--Hb_004102_110 Hb_005496_140 Hb_005496_140 Hb_024439_010--Hb_005496_140 Hb_000638_250--Hb_152784_010 Hb_000103_320 Hb_000103_320 Hb_000638_250--Hb_000103_320 Hb_000261_140 Hb_000261_140 Hb_000638_250--Hb_000261_140 Hb_007044_120 Hb_007044_120 Hb_000638_250--Hb_007044_120 Hb_006831_120 Hb_006831_120 Hb_000638_250--Hb_006831_120 Hb_000317_390 Hb_000317_390 Hb_152784_010--Hb_000317_390 Hb_001318_250 Hb_001318_250 Hb_152784_010--Hb_001318_250 Hb_033594_150 Hb_033594_150 Hb_152784_010--Hb_033594_150 Hb_152784_010--Hb_000103_320 Hb_021068_040 Hb_021068_040 Hb_000805_240--Hb_021068_040 Hb_006615_240 Hb_006615_240 Hb_000805_240--Hb_006615_240 Hb_009615_070 Hb_009615_070 Hb_000805_240--Hb_009615_070 Hb_008071_020 Hb_008071_020 Hb_000805_240--Hb_008071_020 Hb_000805_240--Hb_152784_010 Hb_000608_050 Hb_000608_050 Hb_148121_040--Hb_000608_050 Hb_148121_040--Hb_000638_250 Hb_148121_040--Hb_152784_010 Hb_005054_210 Hb_005054_210 Hb_148121_040--Hb_005054_210 Hb_000403_060 Hb_000403_060 Hb_148121_040--Hb_000403_060 Hb_001390_130 Hb_001390_130 Hb_000291_080--Hb_001390_130 Hb_002111_040 Hb_002111_040 Hb_000291_080--Hb_002111_040 Hb_000820_090 Hb_000820_090 Hb_000291_080--Hb_000820_090 Hb_003697_040 Hb_003697_040 Hb_000291_080--Hb_003697_040 Hb_000363_360 Hb_000363_360 Hb_000291_080--Hb_000363_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.44903 1.76857 2.60138 4.58398 2.84695 2.64828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.12107 5.71834 5.79593 2.91567 1.97324

CAGE analysis