Hb_004701_050

Information

Type -
Description -
Location Contig4701: 61599-69140
Sequence    

Annotation

kegg
ID pop:POPTR_0009s10430g
description POPTRDRAFT_1087083; alpha1 family protein
nr
ID XP_002313854.1
description alpha1 family protein [Populus trichocarpa]
swissprot
ID Q9FX97
description Putative fucosyltransferase-like protein OS=Arabidopsis thaliana GN=FUT12 PE=2 SV=1
trembl
ID B9HS11
description Alpha1 family protein OS=Populus trichocarpa GN=POPTR_0009s10430g PE=3 SV=1
Gene Ontology
ID GO:0016020
description alpha fucosyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44221: 62114-63654 , PASA_asmbl_44222: 65461-69151
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004701_050 0.0 - - alpha1 family protein [Populus trichocarpa]
2 Hb_089140_050 0.0785329594 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
3 Hb_162275_040 0.0802697955 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000261_100 0.082686518 - - PREDICTED: beta-galactosidase 9 isoform X2 [Jatropha curcas]
5 Hb_000780_190 0.0837260773 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
6 Hb_010272_010 0.0873413609 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
7 Hb_000035_410 0.0880807749 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
8 Hb_003104_040 0.0884227249 - - PREDICTED: insulin-degrading enzyme isoform X1 [Jatropha curcas]
9 Hb_000347_560 0.0892647425 - - -
10 Hb_012215_010 0.0896372229 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
11 Hb_000376_060 0.091566407 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
12 Hb_000664_110 0.0920976529 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
13 Hb_002631_140 0.0942014211 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]
14 Hb_017966_020 0.0950526666 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Jatropha curcas]
15 Hb_000640_070 0.0955741458 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
16 Hb_007305_020 0.0957806442 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
17 Hb_003124_160 0.0958362576 - - dynamin, putative [Ricinus communis]
18 Hb_006355_020 0.0967185088 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
19 Hb_160459_040 0.0968041333 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
20 Hb_001109_060 0.0969225976 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_004701_050 Hb_004701_050 Hb_089140_050 Hb_089140_050 Hb_004701_050--Hb_089140_050 Hb_162275_040 Hb_162275_040 Hb_004701_050--Hb_162275_040 Hb_000261_100 Hb_000261_100 Hb_004701_050--Hb_000261_100 Hb_000780_190 Hb_000780_190 Hb_004701_050--Hb_000780_190 Hb_010272_010 Hb_010272_010 Hb_004701_050--Hb_010272_010 Hb_000035_410 Hb_000035_410 Hb_004701_050--Hb_000035_410 Hb_004453_110 Hb_004453_110 Hb_089140_050--Hb_004453_110 Hb_000671_070 Hb_000671_070 Hb_089140_050--Hb_000671_070 Hb_000429_220 Hb_000429_220 Hb_089140_050--Hb_000429_220 Hb_000261_030 Hb_000261_030 Hb_089140_050--Hb_000261_030 Hb_011344_020 Hb_011344_020 Hb_089140_050--Hb_011344_020 Hb_089140_050--Hb_000035_410 Hb_000086_440 Hb_000086_440 Hb_162275_040--Hb_000086_440 Hb_002539_110 Hb_002539_110 Hb_162275_040--Hb_002539_110 Hb_001109_060 Hb_001109_060 Hb_162275_040--Hb_001109_060 Hb_162275_040--Hb_010272_010 Hb_005227_010 Hb_005227_010 Hb_162275_040--Hb_005227_010 Hb_006355_020 Hb_006355_020 Hb_162275_040--Hb_006355_020 Hb_000261_100--Hb_000780_190 Hb_000284_230 Hb_000284_230 Hb_000261_100--Hb_000284_230 Hb_000261_100--Hb_000035_410 Hb_000183_050 Hb_000183_050 Hb_000261_100--Hb_000183_050 Hb_004109_370 Hb_004109_370 Hb_000261_100--Hb_004109_370 Hb_000252_050 Hb_000252_050 Hb_000780_190--Hb_000252_050 Hb_041828_010 Hb_041828_010 Hb_000780_190--Hb_041828_010 Hb_012760_100 Hb_012760_100 Hb_000780_190--Hb_012760_100 Hb_000004_030 Hb_000004_030 Hb_000780_190--Hb_000004_030 Hb_005946_210 Hb_005946_210 Hb_010272_010--Hb_005946_210 Hb_012215_010 Hb_012215_010 Hb_010272_010--Hb_012215_010 Hb_010272_010--Hb_002539_110 Hb_000640_070 Hb_000640_070 Hb_010272_010--Hb_000640_070 Hb_000664_110 Hb_000664_110 Hb_010272_010--Hb_000664_110 Hb_002014_040 Hb_002014_040 Hb_010272_010--Hb_002014_040 Hb_000035_410--Hb_000261_030 Hb_032920_130 Hb_032920_130 Hb_000035_410--Hb_032920_130 Hb_001235_230 Hb_001235_230 Hb_000035_410--Hb_001235_230 Hb_027380_140 Hb_027380_140 Hb_000035_410--Hb_027380_140 Hb_000785_040 Hb_000785_040 Hb_000035_410--Hb_000785_040 Hb_002044_170 Hb_002044_170 Hb_000035_410--Hb_002044_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.65007 7.00246 5.57801 7.22959 9.09869 9.00548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.72864 2.82095 1.99687 4.75873 8.93729

CAGE analysis