Hb_004705_040

Information

Type -
Description -
Location Contig4705: 73030-81627
Sequence    

Annotation

kegg
ID pop:POPTR_0003s16260g
description POPTRDRAFT_830921; hypothetical protein
nr
ID XP_012088735.1
description PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
swissprot
ID Q8RWD5
description Coiled-coil domain-containing protein SCD2 OS=Arabidopsis thaliana GN=SCD2 PE=1 SV=1
trembl
ID A0A067JUS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23107 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44229: 74002-78252 , PASA_asmbl_44230: 74002-78252
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004705_040 0.0 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
2 Hb_004007_160 0.0825403421 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
3 Hb_000554_010 0.0894858652 - - transporter, putative [Ricinus communis]
4 Hb_000299_040 0.1057753718 - - PREDICTED: protein S-acyltransferase 10 isoform X1 [Jatropha curcas]
5 Hb_000956_130 0.1086320969 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
6 Hb_000649_050 0.1110216745 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
7 Hb_007479_050 0.1179619674 - - PREDICTED: uncharacterized protein LOC105649412 [Jatropha curcas]
8 Hb_028358_010 0.126545646 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
9 Hb_000990_080 0.1271241497 - - gulonolactone oxidase, putative [Ricinus communis]
10 Hb_003016_020 0.1274401212 - - PREDICTED: 4-coumarate--CoA ligase-like 6 isoform X1 [Jatropha curcas]
11 Hb_011316_100 0.1277304021 - - PREDICTED: glycosyltransferase family 64 protein C4-like [Jatropha curcas]
12 Hb_000529_160 0.1296938632 - - PREDICTED: uncharacterized protein At1g04910 [Populus euphratica]
13 Hb_005867_060 0.1312531408 - - PREDICTED: NADPH--cytochrome P450 reductase [Jatropha curcas]
14 Hb_003376_050 0.1321315958 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
15 Hb_002681_050 0.1332148082 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
16 Hb_000072_070 0.1339305292 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl diphosphate synthase [Hevea brasiliensis]
17 Hb_007477_080 0.1343579721 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003641_050 0.1352605467 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]
19 Hb_000189_310 0.1385632536 - - PREDICTED: serine/threonine-protein kinase Nek1 isoform X1 [Jatropha curcas]
20 Hb_004375_130 0.138805725 - - kinesin heavy chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_004705_040 Hb_004705_040 Hb_004007_160 Hb_004007_160 Hb_004705_040--Hb_004007_160 Hb_000554_010 Hb_000554_010 Hb_004705_040--Hb_000554_010 Hb_000299_040 Hb_000299_040 Hb_004705_040--Hb_000299_040 Hb_000956_130 Hb_000956_130 Hb_004705_040--Hb_000956_130 Hb_000649_050 Hb_000649_050 Hb_004705_040--Hb_000649_050 Hb_007479_050 Hb_007479_050 Hb_004705_040--Hb_007479_050 Hb_004007_160--Hb_000554_010 Hb_004007_160--Hb_000956_130 Hb_004007_160--Hb_000649_050 Hb_028358_010 Hb_028358_010 Hb_004007_160--Hb_028358_010 Hb_004007_160--Hb_000299_040 Hb_004375_130 Hb_004375_130 Hb_000554_010--Hb_004375_130 Hb_000281_110 Hb_000281_110 Hb_000554_010--Hb_000281_110 Hb_000554_010--Hb_007479_050 Hb_000554_010--Hb_000649_050 Hb_001252_100 Hb_001252_100 Hb_000299_040--Hb_001252_100 Hb_000010_090 Hb_000010_090 Hb_000299_040--Hb_000010_090 Hb_000529_160 Hb_000529_160 Hb_000299_040--Hb_000529_160 Hb_000053_130 Hb_000053_130 Hb_000299_040--Hb_000053_130 Hb_033843_010 Hb_033843_010 Hb_000299_040--Hb_033843_010 Hb_000883_130 Hb_000883_130 Hb_000299_040--Hb_000883_130 Hb_000956_130--Hb_028358_010 Hb_116349_160 Hb_116349_160 Hb_000956_130--Hb_116349_160 Hb_000120_240 Hb_000120_240 Hb_000956_130--Hb_000120_240 Hb_000761_020 Hb_000761_020 Hb_000956_130--Hb_000761_020 Hb_029920_050 Hb_029920_050 Hb_000956_130--Hb_029920_050 Hb_003641_050 Hb_003641_050 Hb_000649_050--Hb_003641_050 Hb_000922_330 Hb_000922_330 Hb_000649_050--Hb_000922_330 Hb_002681_050 Hb_002681_050 Hb_000649_050--Hb_002681_050 Hb_001100_050 Hb_001100_050 Hb_000649_050--Hb_001100_050 Hb_003376_050 Hb_003376_050 Hb_000649_050--Hb_003376_050 Hb_007477_080 Hb_007477_080 Hb_000649_050--Hb_007477_080 Hb_011316_100 Hb_011316_100 Hb_007479_050--Hb_011316_100 Hb_000307_140 Hb_000307_140 Hb_007479_050--Hb_000307_140 Hb_002518_030 Hb_002518_030 Hb_007479_050--Hb_002518_030 Hb_000170_200 Hb_000170_200 Hb_007479_050--Hb_000170_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.8358 1.84775 9.03776 10.9255 8.38231 14.8761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3728 5.76301 8.66341 2.96913 5.40399

CAGE analysis