Hb_004705_090

Information

Type -
Description -
Location Contig4705: 110232-113015
Sequence    

Annotation

kegg
ID rcu:RCOM_1438180
description hypothetical protein
nr
ID XP_002512660.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RFZ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1438180 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44239: 111186-112685
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004705_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_104169_010 0.1726254435 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_072290_010 0.1880487351 - - PREDICTED: GRF1-interacting factor 1 [Gossypium raimondii]
4 Hb_000893_010 0.214066491 - - PREDICTED: uncharacterized protein LOC105135422 [Populus euphratica]
5 Hb_009411_030 0.2257368762 - - PREDICTED: bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3-like [Malus domestica]
6 Hb_001269_570 0.2298093227 - - hypothetical protein POPTR_0001s03430g [Populus trichocarpa]
7 Hb_048183_010 0.2450426785 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
8 Hb_007575_090 0.245746409 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
9 Hb_000521_070 0.2467627789 - - PREDICTED: uncharacterized protein LOC105650323 [Jatropha curcas]
10 Hb_002984_020 0.2471026384 - - hypothetical protein EUGRSUZ_J02661 [Eucalyptus grandis]
11 Hb_007741_090 0.2509158405 - - Autophagy-related 8f -like protein [Gossypium arboreum]
12 Hb_000365_040 0.2552711825 - - PREDICTED: uncharacterized protein LOC105649097 [Jatropha curcas]
13 Hb_004531_180 0.2627816467 - - nitrate transporter, putative [Ricinus communis]
14 Hb_004525_080 0.265002886 - - Sugar transporter ERD6-like 6 [Morus notabilis]
15 Hb_001584_040 0.2687303195 - - PREDICTED: uncharacterized protein LOC105125166 [Populus euphratica]
16 Hb_099990_020 0.2705172823 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
17 Hb_001247_080 0.271474275 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001379_070 0.2736605746 - - hypothetical protein JCGZ_16377 [Jatropha curcas]
19 Hb_000302_110 0.2793068955 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_001248_180 0.2800078153 - - -

Gene co-expression network

sample Hb_004705_090 Hb_004705_090 Hb_104169_010 Hb_104169_010 Hb_004705_090--Hb_104169_010 Hb_072290_010 Hb_072290_010 Hb_004705_090--Hb_072290_010 Hb_000893_010 Hb_000893_010 Hb_004705_090--Hb_000893_010 Hb_009411_030 Hb_009411_030 Hb_004705_090--Hb_009411_030 Hb_001269_570 Hb_001269_570 Hb_004705_090--Hb_001269_570 Hb_048183_010 Hb_048183_010 Hb_004705_090--Hb_048183_010 Hb_104169_010--Hb_072290_010 Hb_000365_040 Hb_000365_040 Hb_104169_010--Hb_000365_040 Hb_104169_010--Hb_009411_030 Hb_000860_030 Hb_000860_030 Hb_104169_010--Hb_000860_030 Hb_008536_030 Hb_008536_030 Hb_104169_010--Hb_008536_030 Hb_072290_010--Hb_048183_010 Hb_002984_020 Hb_002984_020 Hb_072290_010--Hb_002984_020 Hb_133648_010 Hb_133648_010 Hb_072290_010--Hb_133648_010 Hb_178711_010 Hb_178711_010 Hb_072290_010--Hb_178711_010 Hb_004531_180 Hb_004531_180 Hb_000893_010--Hb_004531_180 Hb_000893_010--Hb_104169_010 Hb_000893_010--Hb_072290_010 Hb_006816_110 Hb_006816_110 Hb_000893_010--Hb_006816_110 Hb_000521_070 Hb_000521_070 Hb_000893_010--Hb_000521_070 Hb_001248_180 Hb_001248_180 Hb_009411_030--Hb_001248_180 Hb_010926_020 Hb_010926_020 Hb_009411_030--Hb_010926_020 Hb_057018_010 Hb_057018_010 Hb_009411_030--Hb_057018_010 Hb_008196_010 Hb_008196_010 Hb_009411_030--Hb_008196_010 Hb_081228_010 Hb_081228_010 Hb_009411_030--Hb_081228_010 Hb_045786_010 Hb_045786_010 Hb_009411_030--Hb_045786_010 Hb_108216_030 Hb_108216_030 Hb_001269_570--Hb_108216_030 Hb_001269_570--Hb_000521_070 Hb_001269_570--Hb_000365_040 Hb_000035_510 Hb_000035_510 Hb_001269_570--Hb_000035_510 Hb_001269_570--Hb_000893_010 Hb_001454_080 Hb_001454_080 Hb_001269_570--Hb_001454_080 Hb_007416_080 Hb_007416_080 Hb_048183_010--Hb_007416_080 Hb_048183_010--Hb_133648_010 Hb_001708_010 Hb_001708_010 Hb_048183_010--Hb_001708_010 Hb_048183_010--Hb_178711_010 Hb_000164_130 Hb_000164_130 Hb_048183_010--Hb_000164_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0717092 0.0283484 0.42744 0.0686303 0.0626475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.026092 0

CAGE analysis