Hb_004705_120

Information

Type -
Description -
Location Contig4705: 134855-145772
Sequence    

Annotation

kegg
ID rcu:RCOM_1438200
description ATP binding protein, putative
nr
ID XP_002512662.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q5W7F2
description ADP-ribosylation factor GTPase-activating protein AGD3 OS=Arabidopsis thaliana GN=AGD3 PE=1 SV=1
trembl
ID B9RFZ3
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1438200 PE=4 SV=1
Gene Ontology
ID GO:0005737
description adp-ribosylation factor gtpase-activating protein agd3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44242: 137623-145573 , PASA_asmbl_44243: 138485-139172
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004705_120 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_001519_050 0.0735211486 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
3 Hb_000125_190 0.0848063461 - - PREDICTED: F-box protein SKIP16 isoform X2 [Jatropha curcas]
4 Hb_008616_070 0.0866332095 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
5 Hb_000373_130 0.0903574196 - - PREDICTED: protein FAM188A [Jatropha curcas]
6 Hb_015778_010 0.0915520787 - - PREDICTED: AMSH-like ubiquitin thioesterase 1 [Jatropha curcas]
7 Hb_001080_280 0.0935721847 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
8 Hb_000005_080 0.0983117378 - - PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis]
9 Hb_000635_150 0.0988653024 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
10 Hb_002005_020 0.0997091665 - - conserved hypothetical protein [Ricinus communis]
11 Hb_011953_020 0.10010537 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
12 Hb_000731_260 0.1003216328 - - hypothetical protein RCOM_0905090 [Ricinus communis]
13 Hb_001507_040 0.1005548975 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003462_120 0.1005928866 - - Acidic endochitinase [Theobroma cacao]
15 Hb_000789_220 0.1012917299 - - phosphofructokinase [Hevea brasiliensis]
16 Hb_006615_020 0.1058724656 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
17 Hb_002007_210 0.105893659 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]
18 Hb_012114_040 0.1066743691 - - DNA binding protein, putative [Ricinus communis]
19 Hb_000592_020 0.1088325449 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
20 Hb_002061_040 0.1098999302 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_004705_120 Hb_004705_120 Hb_001519_050 Hb_001519_050 Hb_004705_120--Hb_001519_050 Hb_000125_190 Hb_000125_190 Hb_004705_120--Hb_000125_190 Hb_008616_070 Hb_008616_070 Hb_004705_120--Hb_008616_070 Hb_000373_130 Hb_000373_130 Hb_004705_120--Hb_000373_130 Hb_015778_010 Hb_015778_010 Hb_004705_120--Hb_015778_010 Hb_001080_280 Hb_001080_280 Hb_004705_120--Hb_001080_280 Hb_000635_150 Hb_000635_150 Hb_001519_050--Hb_000635_150 Hb_001519_050--Hb_000373_130 Hb_001519_050--Hb_000125_190 Hb_000005_080 Hb_000005_080 Hb_001519_050--Hb_000005_080 Hb_002061_040 Hb_002061_040 Hb_001519_050--Hb_002061_040 Hb_020400_050 Hb_020400_050 Hb_000125_190--Hb_020400_050 Hb_000125_190--Hb_000635_150 Hb_000125_190--Hb_002061_040 Hb_000123_170 Hb_000123_170 Hb_000125_190--Hb_000123_170 Hb_001833_110 Hb_001833_110 Hb_000125_190--Hb_001833_110 Hb_001507_040 Hb_001507_040 Hb_008616_070--Hb_001507_040 Hb_002660_070 Hb_002660_070 Hb_008616_070--Hb_002660_070 Hb_020805_130 Hb_020805_130 Hb_008616_070--Hb_020805_130 Hb_001904_090 Hb_001904_090 Hb_008616_070--Hb_001904_090 Hb_008616_070--Hb_015778_010 Hb_004837_160 Hb_004837_160 Hb_000373_130--Hb_004837_160 Hb_028515_010 Hb_028515_010 Hb_000373_130--Hb_028515_010 Hb_003349_090 Hb_003349_090 Hb_000373_130--Hb_003349_090 Hb_005568_120 Hb_005568_120 Hb_000373_130--Hb_005568_120 Hb_000567_120 Hb_000567_120 Hb_000373_130--Hb_000567_120 Hb_002007_210 Hb_002007_210 Hb_015778_010--Hb_002007_210 Hb_006420_080 Hb_006420_080 Hb_015778_010--Hb_006420_080 Hb_003502_060 Hb_003502_060 Hb_015778_010--Hb_003502_060 Hb_000414_130 Hb_000414_130 Hb_015778_010--Hb_000414_130 Hb_005306_180 Hb_005306_180 Hb_015778_010--Hb_005306_180 Hb_011344_190 Hb_011344_190 Hb_015778_010--Hb_011344_190 Hb_001519_030 Hb_001519_030 Hb_001080_280--Hb_001519_030 Hb_001080_280--Hb_000635_150 Hb_001080_280--Hb_000123_170 Hb_001105_070 Hb_001105_070 Hb_001080_280--Hb_001105_070 Hb_011953_020 Hb_011953_020 Hb_001080_280--Hb_011953_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.97098 11.9436 5.94092 16.1856 7.53948 11.9567
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.1806 20.717 33.5996 15.6699 7.55214

CAGE analysis