Hb_004705_140

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig4705: 153564-156937
Sequence    

Annotation

kegg
ID rcu:RCOM_1438230
description hypothetical protein
nr
ID XP_012088721.1
description PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JH78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23099 PE=4 SV=1
Gene Ontology
ID GO:0003677
description gt-2-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44244: 153867-156110
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004705_140 0.0 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
2 Hb_009701_010 0.1007011542 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
3 Hb_003994_060 0.1059013065 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
4 Hb_003609_020 0.1217654144 desease resistance Gene Name: Clusterin hypothetical protein CISIN_1g001897mg [Citrus sinensis]
5 Hb_073562_010 0.1244720331 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
6 Hb_002435_110 0.1270033768 transcription factor TF Family: SNF2 PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Jatropha curcas]
7 Hb_003929_130 0.1317306737 - - PREDICTED: uncharacterized protein LOC105643628 [Jatropha curcas]
8 Hb_000330_040 0.13213368 - - PREDICTED: protein RER1B-like [Jatropha curcas]
9 Hb_000175_220 0.1322192074 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
10 Hb_001016_110 0.1375991099 desease resistance Gene Name: Lectin_legB hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
11 Hb_008775_040 0.138031041 - - Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao]
12 Hb_010883_090 0.1401119307 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
13 Hb_005015_070 0.1433640969 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
14 Hb_002007_240 0.1438095466 - - PREDICTED: F-box protein At1g55000 [Jatropha curcas]
15 Hb_001956_200 0.1444294419 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
16 Hb_010172_090 0.1452509214 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_002701_040 0.1459041044 - - PREDICTED: auxin transport protein BIG [Jatropha curcas]
18 Hb_010480_030 0.1464952577 - - PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Jatropha curcas]
19 Hb_001021_080 0.1470476845 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
20 Hb_002110_030 0.1472269357 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_004705_140 Hb_004705_140 Hb_009701_010 Hb_009701_010 Hb_004705_140--Hb_009701_010 Hb_003994_060 Hb_003994_060 Hb_004705_140--Hb_003994_060 Hb_003609_020 Hb_003609_020 Hb_004705_140--Hb_003609_020 Hb_073562_010 Hb_073562_010 Hb_004705_140--Hb_073562_010 Hb_002435_110 Hb_002435_110 Hb_004705_140--Hb_002435_110 Hb_003929_130 Hb_003929_130 Hb_004705_140--Hb_003929_130 Hb_002007_240 Hb_002007_240 Hb_009701_010--Hb_002007_240 Hb_011311_020 Hb_011311_020 Hb_009701_010--Hb_011311_020 Hb_000227_240 Hb_000227_240 Hb_009701_010--Hb_000227_240 Hb_000853_120 Hb_000853_120 Hb_009701_010--Hb_000853_120 Hb_009564_030 Hb_009564_030 Hb_009701_010--Hb_009564_030 Hb_010883_090 Hb_010883_090 Hb_003994_060--Hb_010883_090 Hb_000189_560 Hb_000189_560 Hb_003994_060--Hb_000189_560 Hb_000185_030 Hb_000185_030 Hb_003994_060--Hb_000185_030 Hb_001021_080 Hb_001021_080 Hb_003994_060--Hb_001021_080 Hb_008770_030 Hb_008770_030 Hb_003994_060--Hb_008770_030 Hb_000045_150 Hb_000045_150 Hb_003609_020--Hb_000045_150 Hb_003609_020--Hb_003994_060 Hb_003609_020--Hb_073562_010 Hb_024468_020 Hb_024468_020 Hb_003609_020--Hb_024468_020 Hb_001969_090 Hb_001969_090 Hb_003609_020--Hb_001969_090 Hb_000330_040 Hb_000330_040 Hb_073562_010--Hb_000330_040 Hb_003020_050 Hb_003020_050 Hb_073562_010--Hb_003020_050 Hb_002110_030 Hb_002110_030 Hb_073562_010--Hb_002110_030 Hb_008775_040 Hb_008775_040 Hb_073562_010--Hb_008775_040 Hb_001019_180 Hb_001019_180 Hb_073562_010--Hb_001019_180 Hb_002701_040 Hb_002701_040 Hb_073562_010--Hb_002701_040 Hb_006582_020 Hb_006582_020 Hb_002435_110--Hb_006582_020 Hb_000567_210 Hb_000567_210 Hb_002435_110--Hb_000567_210 Hb_000859_060 Hb_000859_060 Hb_002435_110--Hb_000859_060 Hb_002685_170 Hb_002685_170 Hb_002435_110--Hb_002685_170 Hb_009838_050 Hb_009838_050 Hb_002435_110--Hb_009838_050 Hb_009767_100 Hb_009767_100 Hb_002435_110--Hb_009767_100 Hb_002391_310 Hb_002391_310 Hb_003929_130--Hb_002391_310 Hb_000976_310 Hb_000976_310 Hb_003929_130--Hb_000976_310 Hb_005725_210 Hb_005725_210 Hb_003929_130--Hb_005725_210 Hb_000696_150 Hb_000696_150 Hb_003929_130--Hb_000696_150 Hb_003929_130--Hb_000189_560 Hb_001473_040 Hb_001473_040 Hb_003929_130--Hb_001473_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1629 23.6266 3.20334 3.75638 10.6327 11.6464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.75631 16.9565 18.7161 22.3728 5.60454

CAGE analysis