Hb_004709_010

Information

Type -
Description -
Location Contig4709: 13983-16835
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015895mg
description hypothetical protein
nr
ID KJB41276.1
description hypothetical protein B456_007G097300 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2SH61
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G097300 PE=4 SV=1
Gene Ontology
ID GO:0003824
description threonine aspartase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44253: 13928-16229 , PASA_asmbl_44254: 16255-27970
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004709_010 0.0 - - hypothetical protein B456_007G097300 [Gossypium raimondii]
2 Hb_002686_110 0.0569056135 - - -
3 Hb_005667_040 0.0825697606 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
4 Hb_014720_040 0.0884107446 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
5 Hb_011330_020 0.0934659966 transcription factor TF Family: ARID transcription factor, putative [Ricinus communis]
6 Hb_087749_010 0.0937518215 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
7 Hb_000676_140 0.1011452678 - - structural constituent of ribosome, putative [Ricinus communis]
8 Hb_000160_060 0.1033685474 - - unknown [Populus trichocarpa]
9 Hb_000111_380 0.1050221793 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
10 Hb_002171_060 0.1092394838 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000465_390 0.1104755803 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
12 Hb_000836_470 0.1111165595 - - -
13 Hb_000110_250 0.1139267515 - - PREDICTED: homologous-pairing protein 2 homolog [Jatropha curcas]
14 Hb_003494_050 0.1166902589 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
15 Hb_006573_020 0.1170175916 - - PREDICTED: 40S ribosomal protein S10-like [Jatropha curcas]
16 Hb_001016_150 0.117634866 - - Rop1 [Hevea brasiliensis]
17 Hb_001728_030 0.1186536987 - - 60S ribosomal protein L15 [Populus trichocarpa]
18 Hb_062226_140 0.1190206405 - - PREDICTED: protein NEDD1 [Jatropha curcas]
19 Hb_002601_110 0.1207959834 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
20 Hb_000359_150 0.1222173975 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004709_010 Hb_004709_010 Hb_002686_110 Hb_002686_110 Hb_004709_010--Hb_002686_110 Hb_005667_040 Hb_005667_040 Hb_004709_010--Hb_005667_040 Hb_014720_040 Hb_014720_040 Hb_004709_010--Hb_014720_040 Hb_011330_020 Hb_011330_020 Hb_004709_010--Hb_011330_020 Hb_087749_010 Hb_087749_010 Hb_004709_010--Hb_087749_010 Hb_000676_140 Hb_000676_140 Hb_004709_010--Hb_000676_140 Hb_002686_110--Hb_005667_040 Hb_000160_060 Hb_000160_060 Hb_002686_110--Hb_000160_060 Hb_002686_110--Hb_087749_010 Hb_005000_330 Hb_005000_330 Hb_002686_110--Hb_005000_330 Hb_000768_210 Hb_000768_210 Hb_002686_110--Hb_000768_210 Hb_005667_040--Hb_014720_040 Hb_005278_020 Hb_005278_020 Hb_005667_040--Hb_005278_020 Hb_026314_020 Hb_026314_020 Hb_005667_040--Hb_026314_020 Hb_006573_020 Hb_006573_020 Hb_005667_040--Hb_006573_020 Hb_001016_150 Hb_001016_150 Hb_014720_040--Hb_001016_150 Hb_003894_070 Hb_003894_070 Hb_014720_040--Hb_003894_070 Hb_000836_470 Hb_000836_470 Hb_014720_040--Hb_000836_470 Hb_000005_090 Hb_000005_090 Hb_014720_040--Hb_000005_090 Hb_000110_250 Hb_000110_250 Hb_011330_020--Hb_000110_250 Hb_001056_030 Hb_001056_030 Hb_011330_020--Hb_001056_030 Hb_000599_260 Hb_000599_260 Hb_011330_020--Hb_000599_260 Hb_007827_010 Hb_007827_010 Hb_011330_020--Hb_007827_010 Hb_000160_180 Hb_000160_180 Hb_011330_020--Hb_000160_180 Hb_000431_070 Hb_000431_070 Hb_087749_010--Hb_000431_070 Hb_002613_020 Hb_002613_020 Hb_087749_010--Hb_002613_020 Hb_002798_020 Hb_002798_020 Hb_087749_010--Hb_002798_020 Hb_007065_010 Hb_007065_010 Hb_087749_010--Hb_007065_010 Hb_003025_040 Hb_003025_040 Hb_087749_010--Hb_003025_040 Hb_033153_060 Hb_033153_060 Hb_087749_010--Hb_033153_060 Hb_000011_570 Hb_000011_570 Hb_000676_140--Hb_000011_570 Hb_000866_240 Hb_000866_240 Hb_000676_140--Hb_000866_240 Hb_000676_140--Hb_014720_040 Hb_000676_140--Hb_001016_150 Hb_001863_430 Hb_001863_430 Hb_000676_140--Hb_001863_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.42676 1.41062 4.48294 5.53643 3.35309 5.43261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.22535 10.5632 1.77451 2.98021 3.73181

CAGE analysis